Gene detail

Detail information of GWHGAAZE022867

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008389568.1	PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Malus domestica]
Swissprot	tr\|Q9XIE1\|SNL5_ARATH	Paired amphipathic helix protein Sin3-like 5
trEMBL	tr\|M1C2A4\|M1C2A4_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058222}
TAIR10	AT3G01320.2	SIN3-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79867275	79876432	+
GWHAAZE00000006	mRNA	79867275	79876432	+
GWHAAZE00000006	exon	79867275	79867414	+
GWHAAZE00000006	exon	79867521	79867704	+
GWHAAZE00000006	exon	79867779	79867877	+
GWHAAZE00000006	exon	79868180	79868335	+
GWHAAZE00000006	exon	79868602	79868692	+
GWHAAZE00000006	exon	79869387	79869523	+
GWHAAZE00000006	exon	79871148	79871156	+
GWHAAZE00000006	exon	79871234	79871422	+
GWHAAZE00000006	exon	79871523	79871677	+
GWHAAZE00000006	exon	79871765	79871892	+
GWHAAZE00000006	exon	79871982	79872236	+
GWHAAZE00000006	exon	79872334	79872981	+
GWHAAZE00000006	exon	79873118	79873209	+
GWHAAZE00000006	exon	79873352	79873909	+
GWHAAZE00000006	exon	79874287	79874387	+
GWHAAZE00000006	exon	79874476	79874614	+
GWHAAZE00000006	exon	79875200	79875363	+
GWHAAZE00000006	exon	79875841	79875949	+
GWHAAZE00000006	exon	79876034	79876432	+
GWHAAZE00000006	CDS	79867275	79867414	+
GWHAAZE00000006	CDS	79867521	79867704	+
GWHAAZE00000006	CDS	79867779	79867877	+
GWHAAZE00000006	CDS	79868180	79868335	+
GWHAAZE00000006	CDS	79868602	79868692	+
GWHAAZE00000006	CDS	79869387	79869523	+
GWHAAZE00000006	CDS	79871148	79871156	+
GWHAAZE00000006	CDS	79871234	79871422	+
GWHAAZE00000006	CDS	79871523	79871677	+
GWHAAZE00000006	CDS	79871765	79871892	+
GWHAAZE00000006	CDS	79871982	79872236	+
GWHAAZE00000006	CDS	79872334	79872981	+
GWHAAZE00000006	CDS	79873118	79873209	+
GWHAAZE00000006	CDS	79873352	79873909	+
GWHAAZE00000006	CDS	79874287	79874387	+
GWHAAZE00000006	CDS	79874476	79874614	+
GWHAAZE00000006	CDS	79875200	79875363	+
GWHAAZE00000006	CDS	79875841	79875949	+
GWHAAZE00000006	CDS	79876034	79876183	+
GWHAAZE00000006	three_prime_UTR	79876184	79876432	+

Transcript Sequence
>GWHTAAZE022897 ATGATGGGCGGAAGCAGTGCACAGAAGCTAACAACAAACGACGCCTTGTCATATCTCAAGGCAGTGAAGGACATATTTCAAGACAGAAGGGAAAAGTACGATGAGTTTCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGAATTGATACGGCTGGTGTTATAGCAAGGGTGAAAGAATTATTTAAAGGCCACCCAGACCTAATCTTGGGTTTCAATACCTTTTTGCCAAAGGGATACCAAATCACCCTTCCGCGAGATGAACCACCTCAGTCTAAGAAGCCCGTCGAATTTGAAGAAGCTATTAGCTTCGTAAACAAAATTAAGATGAGGTTCCAAGGTGATGATCATGTGTACAAATCTTTTCTTGACATTTTGAATATGTATAGAAAGGAACACAAATCTATCAGTGAGGTCTACCAGGAGGTTGCTACACTTTTCCATGACCAACCAGACCTGCTTGTGGAGTTCAAGCACTTTTTACCCGATTCTTCTGCAGCAGCCTCTGTTCATTACGCTCCACTCGGTAAGAATATTCTGCAGCAGCCCACGACCACAAAGAGAGTTATGCATGTCGAAAAGAAGCGTAAATCTGGTCGTAGGGTTGAAGACTCTGTTGCTGACCAATTTTACCAAGGTGCAGATGGTGATGAAAACTTTGAAATGTACCCTGGCATACATGACACAGAGTTTTCCTTCTGTGAGAGGGTGAAGGAGAAACTATTTAATTCCGATGATTACCAGGAATTTTTGAAGTGCCTTCATATTTACAGCAGAGAAATAATTACACGATCACAGCTGCAATCTCTAGATCCTTGGGAAAAAGATCGAGAAAACAGAGAAAGGGATAGAGCTGACCGAATTTTAGCATCTAATGGTAAAGATATATCCGGACACAGGATGTCTCTATACTCGAGTAAGGATAAGTATATGGCGAAACCCATTCAAGAGCTTGATCTCTCCAATTGTGAACGTTGCACTCCCAGTTATCGACTTCTGCCAAAGAACTATCCAATCCCTTCAGCAAGCCAAAGAACAGAGATTGGGGCTGAAGTATTGAATGATCATTGGGTGTCCGTTACTTCGGGAAGTGAGGATTACTCTTTTAAACACATGCGTAAAAACCAGTATGAGGAAAGCTTGTTTCGCTGCGAAGATGACAGGTTTGAACTGGACATGCTATTAGAATCTGTGAACGTGACAACTAAACGCGTAGAGGAACTATTAGACAAGATCACAGACAATACAATAAAAACTGATAGTCCAATTCATGTTGAAGACCATTTTACAGCTCTGAATCTAAGGTGCATTGAACGCTTATATGGTGACCATGGTCTGGATGTGATGGATGTATTAAGGAAGAATGCACCTCTCGCTCTGCCCGTTATATTAACCCGCTTGAAACAGAAACAAGAGGAGTGGGCGAGGTGTCGCTCTGATTTTAATAAAGTTTGGGCCGAAATTTATGCCAAAAACTATCACAAGTCACTTGACCACCGTAGCTTCTATTTCAAGCAGCAGGATACAAAGAGCTTGTGCACTAAAGCATTGCTAGCAGAGATTAAAGAGATCAGTGAAACAAAGAGGAAAGAGGATGACGTGCTGCTATCAATTGCTGCTGGTAACCGACGACCCATCATTCCAAATTTGGAATTTGAATATCCCGATTTGCACATCCATGGAAACCTATATAACCTCATCAAGTACTCCTGTGTGGAAGTTTGCACGACTGAACAGTTGGATAAAGTCATGAAGATTTGGACAACTTTCTTGGAACCGATGCTTGGTGTTCCTTCTCGGCCTCAAGGTGCAGAGGACACCGAAGATGTTAAAGTTAGTGATAATCATAATGATGTTGCCAAAAGTGTATCTCCAAGTGTTGGAGAAAGTAATGGCAGCCCAGTTAAATGTAAACAGTCAAATTCTTTGGTTAATGGAGATGATAATACTCCAGCTGAACATTCGAGTTCCTCGAGAGCATGGTTAGTAAATGGTGATAATGGAGTTAGAGAAGATGGTTCTCATAAGAGTGATACCATGTGTAATAATAATACTCCTCAAAATGGAAAAGTTCAGATTAATGTAACAGTGGAAGATGAAACATCTGGGGTTAGCAAAGGTGAACAGATAGCCAACTCACTTGCTGCTGGAGCAGAAGAATGTCAAGGAAGAGTTAATGGGGAAAATACACAAGGGCTTTCTGATATTCCTTCAAGACTGGGCAGGGTTGCTGTTCAAACTGGGTTGCAGATTAAGCCTGGTAATGAAATTTTACCTTCAGCAGAGGGCGGAGATTGTACAAGACCAGTTTCATCTTCCAACGGTGAGAGCACAAGAGTTCAGAAATATCAAAAAGAATCTGCGGGGTGCTTCAAGATTGAAAGAGAGGAAGGCGAATTATCTCCAAATGGAGATTTCGAGGATAACTTTGCAGCATATAGAGATGCTAGTGTAGAGGTCACTCATAAACCGAAGGATAGTGCTGCAGAAAATGACGTCGATGCTGATGAGGAAGGTGAGGAAAGTGCTCAGAGATCATCAGATGAAAGTGAGAATGGTGATGCCTCAGGAAGCGAATCCGCTGATGGTGAAGATTGCTCCCATGAAGAACATGAAGAAGATGGGGATAATGATCACAAGGTTGAGAGTGAAGGTGAAGCAGAAGGAATGGCTGATGCCCATGATGCTGAAGAAAATGGAACGCTGATGCCATTTTCGGAAAGGTTTCTGAAAACAGTGAAGCCTCTCACGAAACACGTTCCTCTGATATTACATGATAAAGAAAAGGATTCTCGGGTGTTTTATGGGAACGATTCCTTCTACGTGCTTTTTAGACTTCATCAAACACTGTATGAGAGAATAAAATCAGCAAAATTCCATTCTTCATCTAGTGAAAATAAATGGAGGGGTTCAAATGATGCAACCCCAACCGATTGGTACTCAAGATTCATGACTGCACTTTTCAATCTACTGGATGGTTCCTCTGATAGTACAAAATTTGAGGATGATTGCCGAGCAATCATTGGAACTCAATCATATCTTCTCTTCACATTAGACAAGCTGATCTATAAACTTGTAAAACAGTCATCCACACCAACTCGTTTATCTATACAGCTTATGGACTATGGGCACGATAAGCCCGAAGTGACAGCTGTTTCCATGGACCCAAATTTTGCATCTTATTTGAACAATGACTTTCTCTCAGTTGTTCCTGACAAAAAGGAGAAGCCAGGCATCTTCTTACGGAGGAATAAACGGAAATATGCGGGTGGAGATGAAATTTCTGCTTGCCAGGGGATGGAAGGACTTCAAGTTGTTAACGGTTTGGAGTGTAAGATTGCTTGCAGCTCATCCAAGGTCTCATATGTTTTAGACACAGAAGACTTGTTGTTTAGAAGAAAAAGGCGAAGTTTGCATCAGAATATGGCATGCAATGACCAGTCAAAGTCTTCAAACGGTTGTTCCCTCAGAGTAGAAAGGTTCCACAGATTGCTATCTTATTCTTAGTACGCATTTCTATGATCAACTAGTACAGTAGATTATACCATATCCTCAAGTTCTTGATATCCTTCTTTCACTAAAGCAACACGCGCGCATGCACACTAACTATTGCTTGTGTGGAAGACTTGGTGTAAGATGTGCTATTGGTTTAAGATCTTAGTATAACTCCGAGCACATTCAATATAGAAGAACAAGGAAAGGGAAAAAGAAGTACCTTAAGGTGTGGTTGTTCTGATCTTGCTCTTTAGTACCCAA

Network for GWHGAAZE022867

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02671.22	PAH	31	75	1.90E-18
PF02671.22	PAH	116	160	5.00E-18
PF08295.13	Sin3_corepress	323	415	5.50E-36
PF16879.6	Sin3a_C	933	1029	5.20E-25
PF16879.6	Sin3a_C	1031	1129	2.00E-09

Protein Sequence

>GWHPAAZE022883
MMGGSSAQKLTTNDALSYLKAVKDIFQDRREKYDEFLEVMKDFKAQRIDTAGVIARVKELFKGHPDLILGFNTFLPKGYQITLPRDEPPQSKKPVEFEEAISFVNKIKMRFQGDDHVYKSFLDILNMYRKEHKSISEVYQEVATLFHDQPDLLVEFKHFLPDSSAAASVHYAPLGKNILQQPTTTKRVMHVEKKRKSGRRVEDSVADQFYQGADGDENFEMYPGIHDTEFSFCERVKEKLFNSDDYQEFLKCLHIYSREIITRSQLQSLDPWEKDRENRERDRADRILASNGKDISGHRMSLYSSKDKYMAKPIQELDLSNCERCTPSYRLLPKNYPIPSASQRTEIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKITDNTIKTDSPIHVEDHFTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLCTKALLAEIKEISETKRKEDDVLLSIAAGNRRPIIPNLEFEYPDLHIHGNLYNLIKYSCVEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVKVSDNHNDVAKSVSPSVGESNGSPVKCKQSNSLVNGDDNTPAEHSSSSRAWLVNGDNGVREDGSHKSDTMCNNNTPQNGKVQINVTVEDETSGVSKGEQIANSLAAGAEECQGRVNGENTQGLSDIPSRLGRVAVQTGLQIKPGNEILPSAEGGDCTRPVSSSNGESTRVQKYQKESAGCFKIEREEGELSPNGDFEDNFAAYRDASVEVTHKPKDSAAENDVDADEEGEESAQRSSDESENGDASGSESADGEDCSHEEHEEDGDNDHKVESEGEAEGMADAHDAEENGTLMPFSERFLKTVKPLTKHVPLILHDKEKDSRVFYGNDSFYVLFRLHQTLYERIKSAKFHSSSSENKWRGSNDATPTDWYSRFMTALFNLLDGSSDSTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQSSTPTRLSIQLMDYGHDKPEVTAVSMDPNFASYLNNDFLSVVPDKKEKPGIFLRRNKRKYAGGDEISACQGMEGLQVVNGLECKIACSSSKVSYVLDTEDLLFRRKRRSLHQNMACNDQSKSSNGCSLRVERFHRLLSYS

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K11644	SIN3A	Mitophagy - yeast	map04139
K11644	SIN3A	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.319
	SRR3591706	second leaf	18.276
	SRR3591707	mature leaf	17.752
	SRR3591708	Shoot apex	28.127
	SRR3591709	Stem	25.624
	SRR3591710	White floral bud	25.514
	SRR3591711	White flower	19.788
	SRR3591712	Green floral bud	30.533
	SRR3591713	Yellow flower	14.174
SRP173429	SRR8316895	Juvenile bud stage	12.831
	SRR8316896	Juvenile bud stage	18.708
	SRR8316897	Juvenile bud stage	12.441
	SRR8316894	Third green stage	9.629
	SRR8316900	Third green stage	27.401
	SRR8316901	Third green stage	25.553
	SRR8316898	Complete white stage	6.739
	SRR8316899	Complete white stage	20.962
	SRR8316903	Complete white stage	14.675
	SRR8316902	Silver flowering stage	6.509
	SRR8316904	Silver flowering stage	13.590
	SRR8316905	Silver flowering stage	4.803
	SRR8316906	Gold flowering stage	17.649
	SRR8316907	Gold flowering stage	15.056
	SRR8316908	Gold flowering stage	18.146
SRP132670	SRR6706286	Control	12.170
	SRR6706287	Light intensity 50%	13.688
	SRR6706288	Light intensity 20%	13.042
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.797
	CNS0095593	Slightly white alabastrum(diploid) 2	16.039
	CNS0095594	Slightly white alabastrum(diploid) 3	14.436
	CNS0095595	Whole white alabastrum(diploid) 2	24.783
	CNS0095596	Whole white alabastrum(diploid) 3	24.470
	CNS0095597	Whole white alabastrum(diploid) 4	29.064
	CNS0095598	Silvery flower (diploied) 1	16.584
	CNS0095599	Silvery flower (diploied) 2	10.980
	CNS0095600	Silvery flower (diploied) 3	19.795
	CNS0095601	Golden flower (diploid) 1	13.611
	CNS0095602	Golden flower (diploid) 2	19.033
	CNS0095603	Golden flower (diploid) 3	17.052
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.042
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.333
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.022
	CNS0095610	Silvery flower (tetraploid) 1	19.547
	CNS0095611	Silvery flower (tetraploid) 2	20.321
	CNS0095612	Silvery flower (tetraploid) 3	18.637
	CNS0095613	Golden flower (tetraploid) 1	8.816
	CNS0095614	Golden flower (tetraploid) 2	16.385
	CNS0095615	Golden flower (tetraploid) 3	16.493
CRA001975	CRR073297	Stem 1	17.078
	CRR073298	Stem 2	17.804
	CRR073299	Stem 3	10.020
	CRR073300	Leaf 1	23.529
	CRR073301	Leaf 2	17.781
	CRR073302	Leaf 3	9.643
	CRR073303	Juvenile bud 1	10.826
	CRR073304	Juvenile bud 2	7.813
	CRR073305	Juvenile bud 3	10.649
	CRR073306	Third green 1	4.100
	CRR073307	Third green 2	3.756
	CRR073308	Third green 3	4.360
	CRR073309	Second white 1	2.539
	CRR073310	Second white 2	4.504
	CRR073311	Second white 3	6.133
	CRR073312	Silver flowering 1	3.698
	CRR073313	Silver flowering 2	3.127
	CRR073314	Silver flowering 3	3.087
	CRR073315	Gold flowering 1	5.309
	CRR073316	Gold flowering 2	8.781
	CRR073317	Gold flowering 3	2.508
	CRR073318	Tawny withering 1	8.408
	CRR073319	Tawny withering 2	6.480
	CRR073320	Tawny withering 3	7.881