Gene detail

Detail information of GWHGAAZE022861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001233804.1	0	protein phosphatase 2A catalytic subunit [Solanum lycopersicum]
COG	YP_001541554.1	4E-37	metallophosphoesterase
Swissprot	tr\|Q07098\|PP2A2_ARATH	0	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit
trEMBL	tr\|M1A307\|M1A307_SOLTU	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT1G10430.1	3E-179	protein phosphatase 2A-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79779525	79786103	+
GWHAAZE00000006	mRNA	79779525	79786103	+
GWHAAZE00000006	exon	79779525	79779777	+
GWHAAZE00000006	exon	79781556	79781670	+
GWHAAZE00000006	exon	79782844	79782952	+
GWHAAZE00000006	exon	79783036	79783113	+
GWHAAZE00000006	exon	79785639	79785830	+
GWHAAZE00000006	exon	79785930	79786103	+
GWHAAZE00000006	CDS	79779525	79779777	+
GWHAAZE00000006	CDS	79781556	79781670	+
GWHAAZE00000006	CDS	79782844	79782952	+
GWHAAZE00000006	CDS	79783036	79783113	+
GWHAAZE00000006	CDS	79785639	79785830	+
GWHAAZE00000006	CDS	79785930	79786103	+

Transcript Sequence
>GWHTAAZE022891 ATGCCTTCGCACGCGGATCTGGACCGTCAGATCGAGCAGTTGATGGAGTGCAAGCCTTTATCTGAGTCTGATGTTAGGACTTTGTGCGACCAGGCTAGGGCTATTCTTGTAGAGGAGTGGAATGTGCAGCCGGTGAAGTGTCCGGTCACGGTGTGTGGTGATATTCACGGACAGTTTTATGATCTGATCGAGCTGTTTCGGATAGGTGGAAATACTCCCGACACCAATTATCTTTTCATGGGCGATTACGTTGATCGTGGGTACTATTCAGTGGAAACTGTCACACTCTTAGTGGCTCTGAAAGTTCGTTATAGAGATAGAATCACAATCCTTCGAGGAAATCATGAAAGCAGGCAAATTACTCAAGTGTATGGTTTTTATGATGAATGCTTGAGAAAGTACGGAAATGCCAATGTCTGGAAGTATTTTACTGATCTTTTTGATTATCTACCTCTTACGGCACTTATTGAGAGTCAGATCTTCTGTTTGCATGGAGGTCTTTCACCATCTTTGGACACACTGGATAATATTCGAGCCTTGGACCGCATCCAGGAGGTTCCACATGAAGGACCAATGTGTGATCTATTATGGTCTGATCCGGATGACAGATGCGGGTGGGGAATATCTCCTCGGGGAGCTGGCTATACCTTTGGACAGGATATAGCGGCTCAGTTCAACCACACCAATGGACTCACCCTCATTTCTAGGGCTCACCAGCTTGTCATGGAAGGTTTCAATTGGTGCCAGGAAAAGAATGTGGTGACGGTATTTAGCGCACCAAACTACTGTTACCGTTGTGGGAATATGGCTGCTATACTTGAAATTGGGGAGAACATGGAACAGAATTTCCTACAATTTGATCCTGCACCCCGGCAAATCGAACCAGACACCACACGCAAGACTCCTGATTATTTTTTGTGA

Network for GWHGAAZE022861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	48	239	1.90E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04382	PPP2C	mRNA surveillance pathway	map03015
		MAPK signaling pathway - fly	map04013
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.175
	SRR3591706	second leaf	58.189
	SRR3591707	mature leaf	52.694
	SRR3591708	Shoot apex	74.315
	SRR3591709	Stem	99.487
	SRR3591710	White floral bud	72.874
	SRR3591711	White flower	72.654
	SRR3591712	Green floral bud	84.078
	SRR3591713	Yellow flower	80.506
SRP173429	SRR8316895	Juvenile bud stage	49.127
	SRR8316896	Juvenile bud stage	61.072
	SRR8316897	Juvenile bud stage	34.304
	SRR8316894	Third green stage	23.554
	SRR8316900	Third green stage	89.909
	SRR8316901	Third green stage	88.669
	SRR8316898	Complete white stage	47.641
	SRR8316899	Complete white stage	125.848
	SRR8316903	Complete white stage	70.867
	SRR8316902	Silver flowering stage	39.011
	SRR8316904	Silver flowering stage	40.030
	SRR8316905	Silver flowering stage	22.018
	SRR8316906	Gold flowering stage	88.874
	SRR8316907	Gold flowering stage	79.493
	SRR8316908	Gold flowering stage	101.991
SRP132670	SRR6706286	Control	95.981
	SRR6706287	Light intensity 50%	103.792
	SRR6706288	Light intensity 20%	109.938
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.602
	CNS0095593	Slightly white alabastrum(diploid) 2	52.943
	CNS0095594	Slightly white alabastrum(diploid) 3	46.208
	CNS0095595	Whole white alabastrum(diploid) 2	59.098
	CNS0095596	Whole white alabastrum(diploid) 3	49.706
	CNS0095597	Whole white alabastrum(diploid) 4	45.855
	CNS0095598	Silvery flower (diploied) 1	51.241
	CNS0095599	Silvery flower (diploied) 2	45.931
	CNS0095600	Silvery flower (diploied) 3	73.387
	CNS0095601	Golden flower (diploid) 1	45.025
	CNS0095602	Golden flower (diploid) 2	71.898
	CNS0095603	Golden flower (diploid) 3	68.625
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.546
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.268
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.231
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.427
	CNS0095609	Whole white alabastrum(tetraploid) 3	86.271
	CNS0095610	Silvery flower (tetraploid) 1	74.936
	CNS0095611	Silvery flower (tetraploid) 2	57.750
	CNS0095612	Silvery flower (tetraploid) 3	54.279
	CNS0095613	Golden flower (tetraploid) 1	41.510
	CNS0095614	Golden flower (tetraploid) 2	70.391
	CNS0095615	Golden flower (tetraploid) 3	69.263
CRA001975	CRR073297	Stem 1	64.892
	CRR073298	Stem 2	68.343
	CRR073299	Stem 3	58.459
	CRR073300	Leaf 1	89.081
	CRR073301	Leaf 2	81.121
	CRR073302	Leaf 3	82.188
	CRR073303	Juvenile bud 1	83.009
	CRR073304	Juvenile bud 2	79.729
	CRR073305	Juvenile bud 3	71.239
	CRR073306	Third green 1	70.721
	CRR073307	Third green 2	63.306
	CRR073308	Third green 3	70.500
	CRR073309	Second white 1	39.553
	CRR073310	Second white 2	49.549
	CRR073311	Second white 3	45.356
	CRR073312	Silver flowering 1	43.954
	CRR073313	Silver flowering 2	39.292
	CRR073314	Silver flowering 3	37.139
	CRR073315	Gold flowering 1	20.583
	CRR073316	Gold flowering 2	31.224
	CRR073317	Gold flowering 3	21.166
	CRR073318	Tawny withering 1	90.942
	CRR073319	Tawny withering 2	73.242
	CRR073320	Tawny withering 3	77.312