Gene detail

Detail information of GWHGAAZE022859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010098235.1	3.6424E-116	hypothetical protein L484_010998 [Morus notabilis]
Swissprot	tr\|Q9LV17\|BH079_ARATH	2E-66	Transcription factor bHLH79
trEMBL	tr\|W9R6V0\|W9R6V0_9ROSA	1E-116	Uncharacterized protein {ECO:0000313\|EMBL:EXB74720.1}
TAIR10	AT1G59640.1	6E-68	BIG PETAL P

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79718643	79721620	+
GWHAAZE00000006	mRNA	79718643	79721620	+
GWHAAZE00000006	exon	79718643	79718975	+
GWHAAZE00000006	exon	79719374	79719571	+
GWHAAZE00000006	exon	79719776	79719841	+
GWHAAZE00000006	exon	79720437	79720505	+
GWHAAZE00000006	exon	79720597	79720668	+
GWHAAZE00000006	exon	79721220	79721620	+
GWHAAZE00000006	CDS	79718643	79718975	+
GWHAAZE00000006	CDS	79719374	79719571	+
GWHAAZE00000006	CDS	79719776	79719841	+
GWHAAZE00000006	CDS	79720437	79720505	+
GWHAAZE00000006	CDS	79720597	79720668	+
GWHAAZE00000006	CDS	79721220	79721348	+
GWHAAZE00000006	three_prime_UTR	79721349	79721620	+

Transcript Sequence
>GWHTAAZE022889 ATGGATCCACAGGCGACGATGATGAACGACGGTTCGTTTCAGTCTGCAACAGCGACGTCATTTAATTTGGCGGAGATCTGGCCTTTTCCGATCAATGCCGCATGTGCTAGTGGTGGTCAATCCGGAGGTAAATTGGACTTGAGGAGAGTTCAGTTTGGGCATAGCTTGGGACAGTTTGCAGACAATGCGAATCCGAATCGAGATGTTTCTATTGACGATCCGATGATTTTGGACCAGAGAGGGACTAACAACGGAGGAGGAACAAGGAAGAGGGGTGAGGAGGATCGGTCTGCAGCTAAGGGTGTTTCCACTAGCAGTGCTGGCAATGCCATGAATTACGTTGATACTAAACGCCTTAAGACGTCAGGATATAGAGATGAGAATGATGAACCCAATGAAGATATGGAAACAAATTCAGGGAAGCTAGTGGAAAAAAATACAAAATTACCGACTGAGCAGCCAAAACAAGATTACATCCACGTGCGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGCGAGAGGATGAGAATTCTGCAAGATCTGGTTCCTGGTTGTAATAAGGTTATTGGCAAAGCACTGGTTCTTGATGAGATAATTAATTACATCCAATCGCTGCAGCGTCAGGTCGAGTTCCTATCAATGAAACTCGAAGCAGTCAATTCGAGACCAAACCCTAGCATTGAAGGCTTTTCTTCAACAGATTATGCTCAACAAACAATTGACATGGCCGGCATTGCATTTGGTTCACAAGCTCCGAAGGAATATAGTAGGGGTTCCTCACCAGACTGGTTGCACATGCAGATTGGTGGTGGTTTTGAAAGAACTACATGATTTGGGTAACTTTTATCAGTTTGCCAATAAGAGCATTAAGAAGCCATACCCTAGAAACATATACGTATTTGTTGAATCGGGAAAATTGTATATCCACTTTTTACATCAGGAATGGGGCTTTGGTTTGTGTATTTAGGACTGCTGGACTTCAATATCTTAGCATCTCCATATCTTGTGTGTGTTAGAAGATGAATTATTTAATCTCCCTACATGTTGTAGCAGGCTTTTTATGTTACTCCGTTCACTAGCCCATACCAAATTCCTATATTTGT

Network for GWHGAAZE022859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0051	GO:0006790 sulfur compound metabolic process GOslim:biological_process GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity GOslim:molecular_function GO:0046854 phosphatidylinositol phosphorylation GOslim:biological_process Transcription factor AUX/IAA family Transcription factor AUX/IAA Transcription factor bHLH family Transcription factor bHLH GO:0046983 protein dimerization activity GOslim:molecular_function map00920 Sulfur metabolism

Module ID

Function Annotation

CFinderModule0051

GO:0006790 sulfur compound metabolic process GOslim:biological_process
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity GOslim:molecular_function
GO:0046854 phosphatidylinositol phosphorylation GOslim:biological_process
Transcription factor AUX/IAA family Transcription factor AUX/IAA
Transcription factor bHLH family Transcription factor bHLH
GO:0046983 protein dimerization activity GOslim:molecular_function
map00920 Sulfur metabolism

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	171	218	6.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.606
	SRR3591706	second leaf	10.574
	SRR3591707	mature leaf	3.054
	SRR3591708	Shoot apex	27.415
	SRR3591709	Stem	17.771
	SRR3591710	White floral bud	86.438
	SRR3591711	White flower	41.049
	SRR3591712	Green floral bud	131.862
	SRR3591713	Yellow flower	11.454
SRP173429	SRR8316895	Juvenile bud stage	27.562
	SRR8316896	Juvenile bud stage	50.698
	SRR8316897	Juvenile bud stage	27.147
	SRR8316894	Third green stage	22.654
	SRR8316900	Third green stage	121.006
	SRR8316901	Third green stage	116.438
	SRR8316898	Complete white stage	41.554
	SRR8316899	Complete white stage	178.682
	SRR8316903	Complete white stage	46.420
	SRR8316902	Silver flowering stage	28.963
	SRR8316904	Silver flowering stage	28.616
	SRR8316905	Silver flowering stage	16.514
	SRR8316906	Gold flowering stage	31.068
	SRR8316907	Gold flowering stage	19.724
	SRR8316908	Gold flowering stage	17.733
SRP132670	SRR6706286	Control	143.666
	SRR6706287	Light intensity 50%	167.601
	SRR6706288	Light intensity 20%	195.531
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.791
	CNS0095593	Slightly white alabastrum(diploid) 2	49.956
	CNS0095594	Slightly white alabastrum(diploid) 3	26.314
	CNS0095595	Whole white alabastrum(diploid) 2	54.784
	CNS0095596	Whole white alabastrum(diploid) 3	46.671
	CNS0095597	Whole white alabastrum(diploid) 4	52.653
	CNS0095598	Silvery flower (diploied) 1	32.664
	CNS0095599	Silvery flower (diploied) 2	42.020
	CNS0095600	Silvery flower (diploied) 3	100.533
	CNS0095601	Golden flower (diploid) 1	32.376
	CNS0095602	Golden flower (diploid) 2	31.169
	CNS0095603	Golden flower (diploid) 3	33.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.282
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.249
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.260
	CNS0095610	Silvery flower (tetraploid) 1	99.892
	CNS0095611	Silvery flower (tetraploid) 2	126.979
	CNS0095612	Silvery flower (tetraploid) 3	139.269
	CNS0095613	Golden flower (tetraploid) 1	24.675
	CNS0095614	Golden flower (tetraploid) 2	37.010
	CNS0095615	Golden flower (tetraploid) 3	14.877
CRA001975	CRR073297	Stem 1	51.306
	CRR073298	Stem 2	50.699
	CRR073299	Stem 3	37.780
	CRR073300	Leaf 1	135.541
	CRR073301	Leaf 2	132.818
	CRR073302	Leaf 3	145.254
	CRR073303	Juvenile bud 1	146.863
	CRR073304	Juvenile bud 2	138.108
	CRR073305	Juvenile bud 3	148.103
	CRR073306	Third green 1	119.822
	CRR073307	Third green 2	79.564
	CRR073308	Third green 3	79.046
	CRR073309	Second white 1	22.901
	CRR073310	Second white 2	22.546
	CRR073311	Second white 3	11.738
	CRR073312	Silver flowering 1	6.413
	CRR073313	Silver flowering 2	5.273
	CRR073314	Silver flowering 3	3.962
	CRR073315	Gold flowering 1	3.046
	CRR073316	Gold flowering 2	3.832
	CRR073317	Gold flowering 3	6.241
	CRR073318	Tawny withering 1	14.897
	CRR073319	Tawny withering 2	10.796
	CRR073320	Tawny withering 3	17.676