Gene detail

Detail information of GWHGAAZE022829

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797869.1	6.3793E-174	PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Nicotiana sylvestris]
Swissprot	tr\|P42056\|VDAC2_SOLTU	6E-174	Mitochondrial outer membrane protein porin of 36 kDa
trEMBL	tr\|A0A059BGL5\|A0A059BGL5_EUCGR	6E-174	Uncharacterized protein {ECO:0000313\|EMBL:KCW65006.1}
TAIR10	AT3G01280.1	2E-111	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79366008	79369083	+
GWHAAZE00000006	mRNA	79366008	79369083	+
GWHAAZE00000006	exon	79366008	79366056	+
GWHAAZE00000006	exon	79366228	79366295	+
GWHAAZE00000006	exon	79367547	79367657	+
GWHAAZE00000006	exon	79367976	79368062	+
GWHAAZE00000006	exon	79368203	79368411	+
GWHAAZE00000006	exon	79368777	79369083	+
GWHAAZE00000006	CDS	79366008	79366056	+
GWHAAZE00000006	CDS	79366228	79366295	+
GWHAAZE00000006	CDS	79367547	79367657	+
GWHAAZE00000006	CDS	79367976	79368062	+
GWHAAZE00000006	CDS	79368203	79368411	+
GWHAAZE00000006	CDS	79368777	79369083	+

Transcript Sequence
>GWHTAAZE022859 ATGGTGAAAGGTCCAGGTTTCTACTCCGATATCGGCAAGAAAGCTCGAGATCTTCTTTACAGGGACTACCAAAACGACCACAAGTTCACCCTCACCACCTACACTTCTAATGGCATCGCCATTACTTCATCTGGAACTAAGAAAGGTGAATTTATTTTGGCGGATGTGAACACCCAACTGAAGAACAAAAACATCACAACTGATGTGAAAGTGGACACAAATTCCAATGTTTCTACGACCATTACCGTGGATGAACCTGCTCCAGGAATCAAGACAATTTTCAGCTTTATTGCTCCTGATCAGAGATCAGCCAAGGTGGAACTTCAATACTTGCACGAGTATGCAGGAATTAGTACCAGCATTGGACTGACTGCAAGTCCCATTGTCAACTTCTCAGGTATGGCTGGTACCAACATGGTCGCAATTGGGACTGATCTCTCATTTGACACTGCTACTGGTAACTTTACCAAATGCAATGCTGGAATTAGTCTCTCCACCGCTGATCTCATTGCCTCTATGACGTTGAATGACAAAGGCGACAAAGTTACTGCATCCTACTACCACACAGTAAGCCCATTGACCAGTACAGCTGTGGGAGCCGAGTTGAGCCATAGCATAGCGAGCAACGAAAATACACTGACCATTGGAACACAGCATTCACTGGACCCACTAACCACTGTGAAAGCCCGGGTCAACAACTTTGGTAAGGCAAGTGCCCTCATCCAGCATGCATGGCGTCCAAAGTCGGTCTTCACAATATCAGGAGAAGTGGACACCAGGGCAATTGAAAAAAGTGCTAAGGTTGGTCTCGCATTGGCTCTCAAACCCTGA

Network for GWHGAAZE022829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	5	269	4.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0098656	biological_process	anion transmembrane transport
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane
GO:0008308	molecular_function	voltage-gated anion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.136
	SRR3591706	second leaf	23.468
	SRR3591707	mature leaf	14.640
	SRR3591708	Shoot apex	31.242
	SRR3591709	Stem	38.635
	SRR3591710	White floral bud	44.400
	SRR3591711	White flower	45.669
	SRR3591712	Green floral bud	73.605
	SRR3591713	Yellow flower	42.345
SRP173429	SRR8316895	Juvenile bud stage	41.807
	SRR8316896	Juvenile bud stage	74.511
	SRR8316897	Juvenile bud stage	37.952
	SRR8316894	Third green stage	33.760
	SRR8316900	Third green stage	104.989
	SRR8316901	Third green stage	106.825
	SRR8316898	Complete white stage	36.107
	SRR8316899	Complete white stage	72.203
	SRR8316903	Complete white stage	57.599
	SRR8316902	Silver flowering stage	37.453
	SRR8316904	Silver flowering stage	42.549
	SRR8316905	Silver flowering stage	23.272
	SRR8316906	Gold flowering stage	76.235
	SRR8316907	Gold flowering stage	87.465
	SRR8316908	Gold flowering stage	86.141
SRP132670	SRR6706286	Control	77.026
	SRR6706287	Light intensity 50%	85.367
	SRR6706288	Light intensity 20%	86.547
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	66.214
	CNS0095593	Slightly white alabastrum(diploid) 2	66.949
	CNS0095594	Slightly white alabastrum(diploid) 3	59.692
	CNS0095595	Whole white alabastrum(diploid) 2	58.661
	CNS0095596	Whole white alabastrum(diploid) 3	70.306
	CNS0095597	Whole white alabastrum(diploid) 4	56.859
	CNS0095598	Silvery flower (diploied) 1	43.869
	CNS0095599	Silvery flower (diploied) 2	39.165
	CNS0095600	Silvery flower (diploied) 3	57.542
	CNS0095601	Golden flower (diploid) 1	37.569
	CNS0095602	Golden flower (diploid) 2	40.906
	CNS0095603	Golden flower (diploid) 3	41.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.846
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.920
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.300
	CNS0095610	Silvery flower (tetraploid) 1	45.392
	CNS0095611	Silvery flower (tetraploid) 2	46.959
	CNS0095612	Silvery flower (tetraploid) 3	55.858
	CNS0095613	Golden flower (tetraploid) 1	35.183
	CNS0095614	Golden flower (tetraploid) 2	46.649
	CNS0095615	Golden flower (tetraploid) 3	40.102
CRA001975	CRR073297	Stem 1	77.037
	CRR073298	Stem 2	61.683
	CRR073299	Stem 3	50.114
	CRR073300	Leaf 1	83.312
	CRR073301	Leaf 2	78.742
	CRR073302	Leaf 3	68.695
	CRR073303	Juvenile bud 1	81.270
	CRR073304	Juvenile bud 2	66.713
	CRR073305	Juvenile bud 3	72.206
	CRR073306	Third green 1	70.438
	CRR073307	Third green 2	65.701
	CRR073308	Third green 3	55.494
	CRR073309	Second white 1	102.231
	CRR073310	Second white 2	83.177
	CRR073311	Second white 3	65.905
	CRR073312	Silver flowering 1	80.048
	CRR073313	Silver flowering 2	89.053
	CRR073314	Silver flowering 3	69.568
	CRR073315	Gold flowering 1	18.502
	CRR073316	Gold flowering 2	29.316
	CRR073317	Gold flowering 3	21.447
	CRR073318	Tawny withering 1	57.063
	CRR073319	Tawny withering 2	49.952
	CRR073320	Tawny withering 3	46.575