Detail information of GWHGAAZE022827


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009758350.10PREDICTED: pectate lyase-like [Nicotiana sylvestris]
COGYP_003976318.16E-28pectate lyase family protein
Swissprottr|Q9SRH4|PLY7_ARATH1E-165Probable pectate lyase 7 (Precursor)
trEMBLtr|M0ZJT8|M0ZJT8_SOLTU0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT3G01270.12E-134Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7934781979349105-
GWHAAZE00000006mRNA7934781979349105-
GWHAAZE00000006exon7934867079349105-
GWHAAZE00000006exon7934847379348636-
GWHAAZE00000006exon7934813479348376-
GWHAAZE00000006exon7934781979348043-
GWHAAZE00000006CDS7934867079349105-
GWHAAZE00000006CDS7934847379348636-
GWHAAZE00000006CDS7934813479348376-
GWHAAZE00000006CDS7934781979348043-
Transcript Sequence

Network for GWHGAAZE022827

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41002714.60E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.207
SRR3591706second leaf1.322
SRR3591707mature leaf3.323
SRR3591708Shoot apex1.902
SRR3591709Stem4.650
SRR3591710White floral bud457.600
SRR3591711White flower23.377
SRR3591712Green floral bud271.464
SRR3591713Yellow flower19.848
SRP173429 SRR8316895Juvenile bud stage 1.068
SRR8316896Juvenile bud stage 1.687
SRR8316897Juvenile bud stage 1.336
SRR8316894Third green stage 0.430
SRR8316900Third green stage 7.876
SRR8316901Third green stage 7.281
SRR8316898Complete white stage 0.335
SRR8316899Complete white stage 0.958
SRR8316903Complete white stage 0.198
SRR8316902Silver flowering stage0.759
SRR8316904Silver flowering stage0.784
SRR8316905Silver flowering stage0.191
SRR8316906Gold flowering stage 1.151
SRR8316907Gold flowering stage 0.753
SRR8316908Gold flowering stage 0.674
SRP132670SRR6706286Control3.379
SRR6706287Light intensity 50%3.924
SRR6706288Light intensity 20%3.335
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.128
CNS0095593Slightly white alabastrum(diploid) 22.143
CNS0095594Slightly white alabastrum(diploid) 31.178
CNS0095595Whole white alabastrum(diploid) 213.637
CNS0095596Whole white alabastrum(diploid) 311.374
CNS0095597Whole white alabastrum(diploid) 423.913
CNS0095598Silvery flower (diploied) 11.079
CNS0095599Silvery flower (diploied) 21.399
CNS0095600Silvery flower (diploied) 31.174
CNS0095601Golden flower (diploid) 11.127
CNS0095602Golden flower (diploid) 21.204
CNS0095603Golden flower (diploid) 31.204
CNS0095604Slightly white alabastrum(tetraploid) 12.735
CNS0095605Slightly white alabastrum(tetraploid) 22.989
CNS0095606Slightly white alabastrum(tetraploid) 30.969
CNS0095607Whole white alabastrum(tetraploid) 112.682
CNS0095608Whole white alabastrum(tetraploid) 240.252
CNS0095609Whole white alabastrum(tetraploid) 310.308
CNS0095610Silvery flower (tetraploid) 11.706
CNS0095611Silvery flower (tetraploid) 21.190
CNS0095612Silvery flower (tetraploid) 31.642
CNS0095613Golden flower (tetraploid) 11.038
CNS0095614Golden flower (tetraploid) 21.063
CNS0095615Golden flower (tetraploid) 31.037
CRA001975CRR073297Stem 11.634
CRR073298Stem 21.393
CRR073299Stem 30.607
CRR073300Leaf 19.657
CRR073301Leaf 26.216
CRR073302Leaf 34.169
CRR073303Juvenile bud 110.641
CRR073304Juvenile bud 29.782
CRR073305Juvenile bud 30.479
CRR073306Third green 10.927
CRR073307Third green 20.629
CRR073308Third green 31.384
CRR073309Second white 10.116
CRR073310Second white 20.467
CRR073311Second white 30.334
CRR073312Silver flowering 10.804
CRR073313Silver flowering 20.670
CRR073314Silver flowering 30.919
CRR073315Gold flowering 14.833
CRR073316Gold flowering 22.391
CRR073317Gold flowering 30.988
CRR073318Tawny withering 10.953
CRR073319Tawny withering 22.294
CRR073320Tawny withering 32.041