Gene detail

Detail information of GWHGAAZE022811

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP41183.1	hypothetical protein JCGZ_15590 [Jatropha curcas]
Swissprot	tr\|Q9ZVH4\|CUL3A_ARATH	Cullin-3A
trEMBL	tr\|A0A067L1V3\|A0A067L1V3_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41183.1}
TAIR10	AT1G26830.1	cullin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78916644	78918671	-
GWHAAZE00000006	mRNA	78916644	78918671	-
GWHAAZE00000006	exon	78916644	78918671	-
GWHAAZE00000006	CDS	78916644	78918671	-

Transcript Sequence
>GWHTAAZE022841 ATGGTGTTGCACAAATACGGGGAAAAGTTGTACACAGGACTTGTGTCAACAATGACTTTCCACCTAAAAGAGATTTCAAAATCTATAGAAGCTGCCCAAGGTGGTTTGTTTCTCGAAGAACTTAACAGGAAATGGACAGATCATAACAAAGCCTTGCAGATGATCCGTGACATACTGATGTACATGGACCGGACTTACATTCCTAGTAACCGTAAGACCCCCGTTCACGAGCTAGGGCTGAACCTTTGGAGGGACAACATCGTCCACGCCAGTGAAATCCAAACGAGGCTTCTAAATACTCTTCTTGAACTAATACATAAAGAACGGACCGGTGAAGTTATTAACCGTGGTTTAATGAGGAATATAATAAAGATGCTTATGGATCTTGGACCTTCGGTTTACCAAGAAGACTTTGAGAAACCTTTTCTTGAAGTTTCAGCTGATTTCTACAGAGTCGAGTCTCAAGAGTTCATAGAGTGCTGCGATTGTGGGGACTATCTAATGAAAGCCGAGAGACGGCTGAATGAAGAAATAGAGAGGGTATCTCACTACTTGGATACGAGGAGCGAAGTGATGATAACTAATGTTGTTGAGAGGGAAATGATTGCAAACCACATGCTTAGACTAGTCCACATGGAAAATTCGGGATTGGTTAACATGTTTCTTGACGACAAGTACGAAGACATGGGAAGAATGTACAACTTGTTCCGTCGGGTCCCCGACGGTCTCTTAACGGTACGGGATGTAATGACTTCTCACCTTAGGGAAACTGGAAAACAGCTCGTTACCGATCCCGAAAAGTTGAAGGATCCTGTGGAGTTCGTTCAGTGCCTCTTGAACGAGAAAGATAAGTATGATAAGATCATAAACTTGGCATTCAACAATGACAAGACGTTCCAGAATGCATTGAATTCGTCTTTCGAGTTCTTCATTAATCTGAACCCTCGTTCACCCGAGTTCATTTCGCTCTATGTTGATGATAAACTCCGCAAAGGTCTCAAGGGGGTCACCGAGGAAGATGTCGAGATTGTTCTCGATAAGGTGATGATGCTGTTCCGTTACCTACAGGAGAAAGATGTTTTCGAGAAATATTATAAACAACATTTAGCAAAGCGACTTTTATCTGGAAAAACAGTATCTGACGATGCTGAGAGAAGCTTGATCGTTAAGTTGAAGACAGAATGTGGGTACCAGTTTACTTCGAAATTGGAAGGCATGTTCACAGACATGAAAACCTCACAGGACACGATGCAGGGTTTTTATGCAAGCCATGGCTCAGAATTAGGAGACAGCCCTACACTCGTGGTTCAGGTTTTAACGACAGGGTCCTGGCCGACCCAGCCTAGCGTCACTTGCAATTTACCGGCTGAAATGTCTGCTTTGTGTGAGAGGTTCCGATCATTTTATCTTGGGACCCACACGGGTAGAAGATTGTCTTGGCAAACTAACATGGGCACGGCCGATTTAAAGGCAACGTTTGGGAAAGGCCAAAAGCATGAGCTGAACGTGTCAACTTATCAAATGTGTGTACTTATGCTGTTTAACAATGCTGATCGGCTTAGCTATAAGGAGATTGAACAGGCCACTGAGATCCCTTCTCCTGATTTGAAGAGGTGCCTTCAATCTCTTGCTTGCGTAAAGGGAAAGAATGTTCTTAGAAAAGAACCAATGAGCAAAGATATTGGGGAGGAGGATGCGTTTTTTGTTAACGACAAGTTCACAAGCAAATTCTACAAGGTGAAGATAGGGACGGTGGTTGCACAAAAGGAGTCCGAGCCTGAAAAACAAGAGACCCGACAGAGAGTCGAGGAGGATAGAAAGCCCCAGATTGAGGCGGCTATAGTGAGGATAATGAAGTCAAGGAGAGTATTGGATCATAACAATATTATTACAGAGGTCACAAAGCAGCTGCAGTCTCGGTTCTTGGCCAACCCTGGAGAGATTAAGAAACGGATCGAGTCGCTTATAGAGAGGGATTTCTTGGAGAGGGATACTGCAGACAGAAAACTGTACCGTTATCTTGCATGA

Network for GWHGAAZE022811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	1	573	2.40E-209
PF10557.10	Cullin_Nedd8	605	666	1.50E-24

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03869	CUL3	Ubiquitin mediated proteolysis	map04120
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.205
	SRR3591706	second leaf	9.562
	SRR3591707	mature leaf	12.730
	SRR3591708	Shoot apex	16.468
	SRR3591709	Stem	16.041
	SRR3591710	White floral bud	20.126
	SRR3591711	White flower	23.044
	SRR3591712	Green floral bud	20.167
	SRR3591713	Yellow flower	20.101
SRP173429	SRR8316895	Juvenile bud stage	9.929
	SRR8316896	Juvenile bud stage	17.022
	SRR8316897	Juvenile bud stage	7.921
	SRR8316894	Third green stage	8.128
	SRR8316900	Third green stage	20.557
	SRR8316901	Third green stage	21.170
	SRR8316898	Complete white stage	9.542
	SRR8316899	Complete white stage	25.726
	SRR8316903	Complete white stage	16.171
	SRR8316902	Silver flowering stage	7.708
	SRR8316904	Silver flowering stage	12.270
	SRR8316905	Silver flowering stage	7.016
	SRR8316906	Gold flowering stage	21.338
	SRR8316907	Gold flowering stage	18.357
	SRR8316908	Gold flowering stage	24.341
SRP132670	SRR6706286	Control	20.661
	SRR6706287	Light intensity 50%	20.689
	SRR6706288	Light intensity 20%	19.576
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.095
	CNS0095593	Slightly white alabastrum(diploid) 2	12.175
	CNS0095594	Slightly white alabastrum(diploid) 3	11.571
	CNS0095595	Whole white alabastrum(diploid) 2	10.923
	CNS0095596	Whole white alabastrum(diploid) 3	9.701
	CNS0095597	Whole white alabastrum(diploid) 4	9.892
	CNS0095598	Silvery flower (diploied) 1	14.729
	CNS0095599	Silvery flower (diploied) 2	13.306
	CNS0095600	Silvery flower (diploied) 3	27.196
	CNS0095601	Golden flower (diploid) 1	16.684
	CNS0095602	Golden flower (diploid) 2	28.446
	CNS0095603	Golden flower (diploid) 3	26.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.874
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.813
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.538
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.558
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.129
	CNS0095610	Silvery flower (tetraploid) 1	22.068
	CNS0095611	Silvery flower (tetraploid) 2	25.763
	CNS0095612	Silvery flower (tetraploid) 3	24.702
	CNS0095613	Golden flower (tetraploid) 1	18.076
	CNS0095614	Golden flower (tetraploid) 2	23.674
	CNS0095615	Golden flower (tetraploid) 3	30.919
CRA001975	CRR073297	Stem 1	15.864
	CRR073298	Stem 2	15.321
	CRR073299	Stem 3	16.749
	CRR073300	Leaf 1	18.577
	CRR073301	Leaf 2	17.331
	CRR073302	Leaf 3	14.530
	CRR073303	Juvenile bud 1	17.471
	CRR073304	Juvenile bud 2	17.349
	CRR073305	Juvenile bud 3	19.429
	CRR073306	Third green 1	15.163
	CRR073307	Third green 2	13.426
	CRR073308	Third green 3	18.070
	CRR073309	Second white 1	16.275
	CRR073310	Second white 2	17.289
	CRR073311	Second white 3	17.866
	CRR073312	Silver flowering 1	17.684
	CRR073313	Silver flowering 2	21.331
	CRR073314	Silver flowering 3	18.899
	CRR073315	Gold flowering 1	9.655
	CRR073316	Gold flowering 2	14.943
	CRR073317	Gold flowering 3	10.898
	CRR073318	Tawny withering 1	18.422
	CRR073319	Tawny withering 2	12.980
	CRR073320	Tawny withering 3	12.054