Detail information of GWHGAAZE022795


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006483144.13.93426E-67PREDICTED: E3 ubiquitin-protein ligase RING1-like [Citrus sinensis]
Swissprottr|Q8LPN7|RNG1L_ARATH2E-22E3 ubiquitin-protein ligase RING1-like
trEMBLtr|V4TJZ0|V4TJZ0_9ROSI3E-67Uncharacterized protein {ECO:0000313|EMBL:ESR51945.1}
TAIR10AT1G26800.15E-34RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7868827378688965-
GWHAAZE00000006mRNA7868827378688965-
GWHAAZE00000006exon7868878878688965-
GWHAAZE00000006exon7868845878688745-
GWHAAZE00000006exon7868827378688412-
GWHAAZE00000006CDS7868878878688965-
GWHAAZE00000006CDS7868845878688745-
GWHAAZE00000006CDS7868827378688412-
Transcript Sequence

Network for GWHGAAZE022795

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21071491.10E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf85.188
SRR3591706second leaf34.672
SRR3591707mature leaf131.989
SRR3591708Shoot apex70.420
SRR3591709Stem84.248
SRR3591710White floral bud55.494
SRR3591711White flower100.421
SRR3591712Green floral bud36.120
SRR3591713Yellow flower84.541
SRP173429 SRR8316895Juvenile bud stage 146.704
SRR8316896Juvenile bud stage 304.102
SRR8316897Juvenile bud stage 119.172
SRR8316894Third green stage 31.368
SRR8316900Third green stage 82.769
SRR8316901Third green stage 140.785
SRR8316898Complete white stage 74.971
SRR8316899Complete white stage 106.586
SRR8316903Complete white stage 114.215
SRR8316902Silver flowering stage201.092
SRR8316904Silver flowering stage213.334
SRR8316905Silver flowering stage174.269
SRR8316906Gold flowering stage 483.477
SRR8316907Gold flowering stage 467.484
SRR8316908Gold flowering stage 323.620
SRP132670SRR6706286Control124.899
SRR6706287Light intensity 50%110.264
SRR6706288Light intensity 20%105.759
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.768
CNS0095593Slightly white alabastrum(diploid) 228.419
CNS0095594Slightly white alabastrum(diploid) 335.395
CNS0095595Whole white alabastrum(diploid) 220.056
CNS0095596Whole white alabastrum(diploid) 321.991
CNS0095597Whole white alabastrum(diploid) 428.531
CNS0095598Silvery flower (diploied) 158.240
CNS0095599Silvery flower (diploied) 2261.546
CNS0095600Silvery flower (diploied) 3288.289
CNS0095601Golden flower (diploid) 1264.216
CNS0095602Golden flower (diploid) 2208.119
CNS0095603Golden flower (diploid) 3217.365
CNS0095604Slightly white alabastrum(tetraploid) 164.150
CNS0095605Slightly white alabastrum(tetraploid) 262.530
CNS0095606Slightly white alabastrum(tetraploid) 394.777
CNS0095607Whole white alabastrum(tetraploid) 155.291
CNS0095608Whole white alabastrum(tetraploid) 249.433
CNS0095609Whole white alabastrum(tetraploid) 382.903
CNS0095610Silvery flower (tetraploid) 1212.502
CNS0095611Silvery flower (tetraploid) 2218.511
CNS0095612Silvery flower (tetraploid) 3151.270
CNS0095613Golden flower (tetraploid) 1287.945
CNS0095614Golden flower (tetraploid) 2256.019
CNS0095615Golden flower (tetraploid) 3114.641
CRA001975CRR073297Stem 125.511
CRR073298Stem 227.515
CRR073299Stem 333.920
CRR073300Leaf 132.103
CRR073301Leaf 230.710
CRR073302Leaf 337.008
CRR073303Juvenile bud 132.545
CRR073304Juvenile bud 232.902
CRR073305Juvenile bud 325.593
CRR073306Third green 1135.930
CRR073307Third green 2128.298
CRR073308Third green 393.110
CRR073309Second white 173.241
CRR073310Second white 286.740
CRR073311Second white 358.279
CRR073312Silver flowering 129.654
CRR073313Silver flowering 220.565
CRR073314Silver flowering 328.926
CRR073315Gold flowering 131.552
CRR073316Gold flowering 229.661
CRR073317Gold flowering 329.668
CRR073318Tawny withering 170.471
CRR073319Tawny withering 241.849
CRR073320Tawny withering 370.453