Gene detail

Detail information of GWHGAAZE022794

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651953.1	5.206E-116	PREDICTED: uncharacterized protein LOC100255052 [Vitis vinifera]
Swissprot	tr\|Q9SAK5\|APL_ARATH	4E-33	Myb family transcription factor APL
trEMBL	tr\|F6HPQ8\|F6HPQ8_VITVI	2E-116	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56539.1}
TAIR10	AT1G69580.1	1E-35	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78685117	78686626	+
GWHAAZE00000006	mRNA	78685117	78686626	+
GWHAAZE00000006	exon	78685117	78685374	+
GWHAAZE00000006	exon	78685536	78685599	+
GWHAAZE00000006	exon	78685688	78685757	+
GWHAAZE00000006	exon	78685868	78685937	+
GWHAAZE00000006	exon	78686045	78686626	+
GWHAAZE00000006	CDS	78685117	78685374	+
GWHAAZE00000006	CDS	78685536	78685599	+
GWHAAZE00000006	CDS	78685688	78685757	+
GWHAAZE00000006	CDS	78685868	78685937	+
GWHAAZE00000006	CDS	78686045	78686626	+

Transcript Sequence
>GWHTAAZE022824 ATGGCTCTTCAGAATATGCATAATCAAGATATGAACTTGGTTCTGTCTAGTGATGCAAAACCAAGGCTAAAATGGACTCCAGAGCTTCACCAAAGATTCGTCGACGCGGTCACTCAGCTAGGAGGACCAGAGAGTAAAATCTTGTCAAGCTTTATGATCTTTTTTTTTTTTTTTTCCTTTTTAATGTTGAGGAGTTTATTACAGGATATCATTGATGTTTCTATATGTGCAGAGGCAACACCTAAATCCTTGATGAGGAAATATCGGCTGGGGAAAAGCCAACAATCCGAAAGCTACAGCGAAGATAAACAAGAAGCTGCTGAATGTGGAGATAATCAGAGGAGTCACTTCAGTTTTGATTACAGTGACGGAGCCCAGAATCAGATTAACGAAAGCTTGCAGATAGCTCAGGCTCTGGAAATGCAAATGGAAGTGCAGAGGAAACTTTATGAGCAGATTGAGGTACAAAGACATTTGCAATTACGAATCGAGGCTCAAGGTAAATATCTACAATCGGTATTAAAGAAAGCGCAAGATACACTAGCAGGTTATAGTTCTTCATCAGCAGAAGTGGAAGCTGCTAAAGCCGAACTCTCTCAATTAGTCTCAATGGTGGACACAACATCTTCTATATCGGCATTAACGGAAACCGGAGGCTTAAGCCCAAAAGAATTCAAAAAAAGCCCATTAATAGGCACCGGGTGTTCACTAGAAAGCTCATTGACATCATCAGAGAGCTCGGGAAGAAAGGAAGAGGCTCAACGGAAACAAGAAAATGATAGAAATTCGGTCGTACTATCATTAATGGAAATGCGTTCAGGAGAAAAGAGCGGTTCAAGCAATCAAAATAATGGAAGGAAGAGAAGTGGGAGCACCATTTCCGATGGTAACTGCAAGGAACAACCTTGGAATAAAAGATCGCCAAATGGCGAATCGGGTAAGTTTGGATTGGTGGAGAGGCTTGATTTGAACAGCAGCCAATATGTGAATGAGTTTGATACATTTCCAAAGGGGATAGACTTGAACTGCAATGGACATCTTTAG

Network for GWHGAAZE022794

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14379.7	Myb_CC_LHEQLE	133	179	6.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.427
	SRR3591706	second leaf	31.908
	SRR3591707	mature leaf	69.956
	SRR3591708	Shoot apex	33.444
	SRR3591709	Stem	25.303
	SRR3591710	White floral bud	14.221
	SRR3591711	White flower	55.136
	SRR3591712	Green floral bud	6.802
	SRR3591713	Yellow flower	21.937
SRP173429	SRR8316895	Juvenile bud stage	1.017
	SRR8316896	Juvenile bud stage	1.196
	SRR8316897	Juvenile bud stage	0.369
	SRR8316894	Third green stage	0.870
	SRR8316900	Third green stage	1.814
	SRR8316901	Third green stage	1.211
	SRR8316898	Complete white stage	2.554
	SRR8316899	Complete white stage	4.021
	SRR8316903	Complete white stage	2.506
	SRR8316902	Silver flowering stage	12.233
	SRR8316904	Silver flowering stage	10.674
	SRR8316905	Silver flowering stage	4.837
	SRR8316906	Gold flowering stage	13.847
	SRR8316907	Gold flowering stage	19.230
	SRR8316908	Gold flowering stage	16.256
SRP132670	SRR6706286	Control	0.656
	SRR6706287	Light intensity 50%	0.756
	SRR6706288	Light intensity 20%	0.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.836
	CNS0095593	Slightly white alabastrum(diploid) 2	3.042
	CNS0095594	Slightly white alabastrum(diploid) 3	1.960
	CNS0095595	Whole white alabastrum(diploid) 2	1.021
	CNS0095596	Whole white alabastrum(diploid) 3	0.789
	CNS0095597	Whole white alabastrum(diploid) 4	1.845
	CNS0095598	Silvery flower (diploied) 1	7.539
	CNS0095599	Silvery flower (diploied) 2	7.274
	CNS0095600	Silvery flower (diploied) 3	11.340
	CNS0095601	Golden flower (diploid) 1	3.254
	CNS0095602	Golden flower (diploid) 2	5.510
	CNS0095603	Golden flower (diploid) 3	5.656
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.121
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.984
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.358
	CNS0095610	Silvery flower (tetraploid) 1	20.582
	CNS0095611	Silvery flower (tetraploid) 2	8.987
	CNS0095612	Silvery flower (tetraploid) 3	8.322
	CNS0095613	Golden flower (tetraploid) 1	7.074
	CNS0095614	Golden flower (tetraploid) 2	10.225
	CNS0095615	Golden flower (tetraploid) 3	2.809
CRA001975	CRR073297	Stem 1	0.786
	CRR073298	Stem 2	1.177
	CRR073299	Stem 3	2.300
	CRR073300	Leaf 1	0.969
	CRR073301	Leaf 2	1.327
	CRR073302	Leaf 3	1.225
	CRR073303	Juvenile bud 1	1.446
	CRR073304	Juvenile bud 2	0.509
	CRR073305	Juvenile bud 3	0.911
	CRR073306	Third green 1	5.520
	CRR073307	Third green 2	11.847
	CRR073308	Third green 3	10.894
	CRR073309	Second white 1	6.698
	CRR073310	Second white 2	8.009
	CRR073311	Second white 3	3.428
	CRR073312	Silver flowering 1	1.583
	CRR073313	Silver flowering 2	0.713
	CRR073314	Silver flowering 3	1.382
	CRR073315	Gold flowering 1	13.596
	CRR073316	Gold flowering 2	21.769
	CRR073317	Gold flowering 3	9.388
	CRR073318	Tawny withering 1	12.729
	CRR073319	Tawny withering 2	25.349
	CRR073320	Tawny withering 3	16.601