Detail information of GWHGAAZE022735


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282341.30PREDICTED: putative ATP-dependent RNA helicase DHX33 [Vitis vinifera]
COGYP_631380.12E-68ATP-dependent helicase HrpA
Swissprottr|Q38953|DHX8_ARATH1E-124Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|F6GVM6|F6GVM6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43988.1}
TAIR10AT1G26370.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7780708077813516-
GWHAAZE00000006mRNA7780708077813516-
GWHAAZE00000006exon7781345577813516-
GWHAAZE00000006exon7781216977812215-
GWHAAZE00000006exon7781177077811850-
GWHAAZE00000006exon7781093377811149-
GWHAAZE00000006exon7781023077810650-
GWHAAZE00000006exon7780990077810103-
GWHAAZE00000006exon7780896877809101-
GWHAAZE00000006exon7780857677808816-
GWHAAZE00000006exon7780708077807271-
GWHAAZE00000006CDS7781345577813516-
GWHAAZE00000006CDS7781216977812215-
GWHAAZE00000006CDS7781177077811850-
GWHAAZE00000006CDS7781093377811149-
GWHAAZE00000006CDS7781023077810650-
GWHAAZE00000006CDS7780990077810103-
GWHAAZE00000006CDS7780896877809101-
GWHAAZE00000006CDS7780857677808816-
GWHAAZE00000006CDS7780708077807271-
Transcript Sequence

Network for GWHGAAZE022735

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04408.24HA24695298.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12818DHX8, PRP22 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.422
SRR3591706second leaf3.582
SRR3591707mature leaf5.520
SRR3591708Shoot apex6.749
SRR3591709Stem7.870
SRR3591710White floral bud8.587
SRR3591711White flower10.001
SRR3591712Green floral bud6.005
SRR3591713Yellow flower9.150
SRP173429 SRR8316895Juvenile bud stage 4.859
SRR8316896Juvenile bud stage 6.331
SRR8316897Juvenile bud stage 3.086
SRR8316894Third green stage 1.737
SRR8316900Third green stage 4.678
SRR8316901Third green stage 3.871
SRR8316898Complete white stage 2.090
SRR8316899Complete white stage 7.352
SRR8316903Complete white stage 4.245
SRR8316902Silver flowering stage2.661
SRR8316904Silver flowering stage4.748
SRR8316905Silver flowering stage1.914
SRR8316906Gold flowering stage 7.645
SRR8316907Gold flowering stage 7.355
SRR8316908Gold flowering stage 5.329
SRP132670SRR6706286Control3.385
SRR6706287Light intensity 50%3.971
SRR6706288Light intensity 20%4.037
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.599
CNS0095593Slightly white alabastrum(diploid) 24.905
CNS0095594Slightly white alabastrum(diploid) 35.357
CNS0095595Whole white alabastrum(diploid) 24.638
CNS0095596Whole white alabastrum(diploid) 33.203
CNS0095597Whole white alabastrum(diploid) 44.710
CNS0095598Silvery flower (diploied) 19.266
CNS0095599Silvery flower (diploied) 27.627
CNS0095600Silvery flower (diploied) 36.125
CNS0095601Golden flower (diploid) 110.938
CNS0095602Golden flower (diploid) 28.416
CNS0095603Golden flower (diploid) 38.337
CNS0095604Slightly white alabastrum(tetraploid) 14.891
CNS0095605Slightly white alabastrum(tetraploid) 23.597
CNS0095606Slightly white alabastrum(tetraploid) 35.087
CNS0095607Whole white alabastrum(tetraploid) 15.204
CNS0095608Whole white alabastrum(tetraploid) 21.982
CNS0095609Whole white alabastrum(tetraploid) 34.224
CNS0095610Silvery flower (tetraploid) 18.178
CNS0095611Silvery flower (tetraploid) 27.562
CNS0095612Silvery flower (tetraploid) 38.349
CNS0095613Golden flower (tetraploid) 15.651
CNS0095614Golden flower (tetraploid) 26.144
CNS0095615Golden flower (tetraploid) 35.081
CRA001975CRR073297Stem 14.722
CRR073298Stem 24.990
CRR073299Stem 32.452
CRR073300Leaf 14.691
CRR073301Leaf 23.211
CRR073302Leaf 30.993
CRR073303Juvenile bud 11.114
CRR073304Juvenile bud 21.175
CRR073305Juvenile bud 31.589
CRR073306Third green 10.797
CRR073307Third green 20.812
CRR073308Third green 31.300
CRR073309Second white 10.767
CRR073310Second white 21.684
CRR073311Second white 31.104
CRR073312Silver flowering 10.852
CRR073313Silver flowering 20.446
CRR073314Silver flowering 30.278
CRR073315Gold flowering 10.912
CRR073316Gold flowering 21.469
CRR073317Gold flowering 30.615
CRR073318Tawny withering 13.062
CRR073319Tawny withering 25.429
CRR073320Tawny withering 32.736