Gene detail

Detail information of GWHGAAZE022732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786232.1	0	PREDICTED: serine/threonine-protein kinase dst1 [Nicotiana sylvestris]
COG	YP_002560205.1	2E-30	hypothetical protein MCCL_0802
Swissprot	tr\|O22040\|ANP1_ARATH	3E-47	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|K4BXT6\|K4BXT6_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g012130.2.1}
TAIR10	AT1G69220.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77752743	77766577	-
GWHAAZE00000006	mRNA	77752743	77766577	-
GWHAAZE00000006	exon	77752743	77752836	-
GWHAAZE00000006	exon	77753792	77753877	-
GWHAAZE00000006	exon	77753958	77754158	-
GWHAAZE00000006	exon	77754922	77755090	-
GWHAAZE00000006	exon	77755220	77755370	-
GWHAAZE00000006	exon	77756876	77756978	-
GWHAAZE00000006	exon	77760047	77760128	-
GWHAAZE00000006	exon	77760642	77760697	-
GWHAAZE00000006	exon	77762103	77762138	-
GWHAAZE00000006	exon	77762380	77762424	-
GWHAAZE00000006	exon	77763875	77763937	-
GWHAAZE00000006	exon	77764281	77764333	-
GWHAAZE00000006	exon	77764573	77764663	-
GWHAAZE00000006	exon	77765069	77765176	-
GWHAAZE00000006	exon	77765335	77765442	-
GWHAAZE00000006	exon	77765708	77765796	-
GWHAAZE00000006	exon	77766007	77766577	-
GWHAAZE00000006	CDS	77766007	77766577	-
GWHAAZE00000006	CDS	77765708	77765796	-
GWHAAZE00000006	CDS	77765335	77765442	-
GWHAAZE00000006	CDS	77765069	77765176	-
GWHAAZE00000006	CDS	77764573	77764663	-
GWHAAZE00000006	CDS	77764281	77764333	-
GWHAAZE00000006	CDS	77763875	77763937	-
GWHAAZE00000006	CDS	77762380	77762424	-
GWHAAZE00000006	CDS	77762103	77762138	-
GWHAAZE00000006	CDS	77760642	77760697	-
GWHAAZE00000006	CDS	77760047	77760128	-
GWHAAZE00000006	CDS	77756876	77756978	-
GWHAAZE00000006	CDS	77755220	77755370	-
GWHAAZE00000006	CDS	77754922	77755090	-
GWHAAZE00000006	CDS	77753958	77754158	-
GWHAAZE00000006	CDS	77753792	77753877	-
GWHAAZE00000006	CDS	77752743	77752836	-

Transcript Sequence
>GWHTAAZE022762 ATGCTACGCAAAGACGATCCAAATTCCGACGATGACGACTCTCTCCCTCCTCTCCTCAAACGTCTCCCCAAGGACTTCGACGCCGCCGTTAACTTTGACGACGACGACGACGTCTATGACGATTACGACGAATTCTCCGGTTCCGGTACAATGATTGTCAAAAGCGATCGCAATCGCAACCAATCCTCTACGTCTTCTGGTTCCACTCGGAAGCCGCGTAGTAATCCCTACTCGGATCGGAAAATTGAGGAAGAGGATAACAATTTCTCGACGTTTGTAGTGAGATCTACTGTGAAGGAGAGGGAAATGGAGGATACAGGGACGGTTGTGAGGCGTAGTAGTGGTGGTGTAGGGATGAGTGACGGTGGTTCGACGATGAGTAGGGCGGTGGCGAGTATGCAGGGGGTGGGGGAAGGGTTTGGGAAGCAGAGGAGAAGTGCATCGTCTTCGCAGCAGGAGGAAGAAGGAGGGCAATCGCGGTACCAGATGAGTAAAATGTCTTCGAGTTCAATTCCGGATAGTCTTACGAGGGAAGATCCTTCTACTAAGTACGATTTGCTCCACGAACTCGGAAAGGGTTCATATGGCTCTGTTTATAAAGCTCGGGATTTAAGAACTTCAGAGATGGTTGCTATCAAAGTGATATCCCTATCTGAAGGGGAGGAGGGTTATGAAGAGATTCGAGGGGAGATTGAGATGTTGCAGCAATGTAGCCATCCTAATGTTGTTCGTTACCTTGGAAGCTACCAGGGCGAAGAGTACCTTTGGATTGTAATGGAGTACTGCGGGGGTGGAAGTGTTGCAGACTTGATGAATGTAACAGATGAACCGTTGGAGGAGTACCAAATTGCTTATATATGTAGGGAAGCACTGAAGGGTTTGTCGTATTTGCACTCAATTTTCAAGGTACACAGAGATATCAAAGGTGGTAATATCTTGTTGACTGAACAGGGAGAGGTCAAGTTGGGTGATTTTGGTGTTGCGGCACAGTTGACAAGAACCATGTCCAAGCGTAACACGTTCATTGGGACCCCCCATTGGATGGCTCCAGAAGTTATTCAGGAAAGCCGCTACGATGGCAAGGTTGATGTGTGGGCCCTTGGAGTGTCTGCAATTGAAATGGCAGAGGGTCTTCCTCCAAGATCGACGGTGCATCCGATGAGGGTATTGTTCATGATATCCATAGAGCCAGCCCCAATGCTCGAGGACAAAGAGAAATGGTCACTTGTGTTCCATGACTTCATTGCAAAGTGCCTTACAAAAGAACCTCGTCTTCGTCCTACTGCATCTGAGATGCTTAAGCCACAAGGTGGTCAAAAAGTGAACGAAGATTATGGAGATACCATTCCATCTAGGCCTAATAACATTGGTCTTCCAGCCAATGGTATGGATCCAGCTGGAGAAGGTGAGTTTGGGACTGTAATAGTTCGTGGAAGTGAGAATGATAATACAGCTGTCAAATCAATGGAGCCCAATGCTACAGGACCCTCCCCTGCCCTCAGAGAGGCTGGAACTCCCTCTGTCAGTGGTGCAGGAGATAAATCAGTTGACCCCGGGGTTGGCAATGCAGTTGGTGTTGCAGATACCTTCCTAGTCAACGGATTGCAACCGTCTTTTTCTATTTCAAAGTCCGCGTATCCCGACCAAAATAGCATCTCCCAAGTAAATGATGGTAGCGGTGGCACATTGGGTACTGATACTGTTAGTCGGAAAGCGTTAGATAAGCTTTGGTCCATATATGCTGCTGGTAATACAGTACCCATTCCATTTCTGAGAGCTACTGATATATCACCCATTGCACTATTGTCTGGGGATGTGCTTGGTGGCTTCCAGTGTGACAATGGTGGAAACATAGCTGTGGAAGCAATGCAAGAGCTTTTTACTGGTGATGGCCAATCTAAAAAGGGGCGAAGTAGACAAAACGAGGTGCCCCTTCCTCCAAGTGTGTACCAGAGACTCACTGCAAGTCCTACACTAATGAATCTCGCTCAGGCTTTAGCTTACCACAAAATGTGCTATGAAGAGATGCCACTCCAGGAAATTCAAGCAGCCCAAGAGCAACAAACCATTCAGAACCTTTGTGATACGCTTCGAACCATTTTACGA

Network for GWHGAAZE022732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	184	434	1.50E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE20-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.384
	SRR3591706	second leaf	25.199
	SRR3591707	mature leaf	23.306
	SRR3591708	Shoot apex	40.797
	SRR3591709	Stem	43.075
	SRR3591710	White floral bud	36.449
	SRR3591711	White flower	21.814
	SRR3591712	Green floral bud	37.463
	SRR3591713	Yellow flower	9.636
SRP173429	SRR8316895	Juvenile bud stage	18.243
	SRR8316896	Juvenile bud stage	28.172
	SRR8316897	Juvenile bud stage	12.460
	SRR8316894	Third green stage	9.218
	SRR8316900	Third green stage	24.788
	SRR8316901	Third green stage	24.310
	SRR8316898	Complete white stage	9.339
	SRR8316899	Complete white stage	33.037
	SRR8316903	Complete white stage	15.921
	SRR8316902	Silver flowering stage	5.263
	SRR8316904	Silver flowering stage	7.517
	SRR8316905	Silver flowering stage	3.279
	SRR8316906	Gold flowering stage	9.053
	SRR8316907	Gold flowering stage	9.518
	SRR8316908	Gold flowering stage	10.559
SRP132670	SRR6706286	Control	23.593
	SRR6706287	Light intensity 50%	26.849
	SRR6706288	Light intensity 20%	27.967
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.500
	CNS0095593	Slightly white alabastrum(diploid) 2	19.464
	CNS0095594	Slightly white alabastrum(diploid) 3	22.527
	CNS0095595	Whole white alabastrum(diploid) 2	18.981
	CNS0095596	Whole white alabastrum(diploid) 3	20.700
	CNS0095597	Whole white alabastrum(diploid) 4	23.473
	CNS0095598	Silvery flower (diploied) 1	21.679
	CNS0095599	Silvery flower (diploied) 2	18.183
	CNS0095600	Silvery flower (diploied) 3	16.299
	CNS0095601	Golden flower (diploid) 1	20.041
	CNS0095602	Golden flower (diploid) 2	19.410
	CNS0095603	Golden flower (diploid) 3	16.715
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.698
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.454
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.384
	CNS0095610	Silvery flower (tetraploid) 1	17.770
	CNS0095611	Silvery flower (tetraploid) 2	16.302
	CNS0095612	Silvery flower (tetraploid) 3	13.317
	CNS0095613	Golden flower (tetraploid) 1	7.008
	CNS0095614	Golden flower (tetraploid) 2	12.687
	CNS0095615	Golden flower (tetraploid) 3	3.799
CRA001975	CRR073297	Stem 1	35.217
	CRR073298	Stem 2	30.791
	CRR073299	Stem 3	26.998
	CRR073300	Leaf 1	35.529
	CRR073301	Leaf 2	33.010
	CRR073302	Leaf 3	20.895
	CRR073303	Juvenile bud 1	21.066
	CRR073304	Juvenile bud 2	16.629
	CRR073305	Juvenile bud 3	26.219
	CRR073306	Third green 1	4.038
	CRR073307	Third green 2	5.058
	CRR073308	Third green 3	5.609
	CRR073309	Second white 1	2.300
	CRR073310	Second white 2	2.481
	CRR073311	Second white 3	1.716
	CRR073312	Silver flowering 1	0.989
	CRR073313	Silver flowering 2	0.956
	CRR073314	Silver flowering 3	1.365
	CRR073315	Gold flowering 1	8.293
	CRR073316	Gold flowering 2	17.346
	CRR073317	Gold flowering 3	8.569
	CRR073318	Tawny withering 1	25.220
	CRR073319	Tawny withering 2	21.309
	CRR073320	Tawny withering 3	26.547