Gene detail

Detail information of GWHGAAZE022713

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006484265.1	5.8781E-151	PREDICTED: uncharacterized protein LOC102627575 isoform X1 [Citrus sinensis]
COG	NP_621791.1	7E-51	3-methyladenine DNA glycosylase
trEMBL	tr\|A0A067FVV1\|A0A067FVV1_CITSI	3E-151	Uncharacterized protein {ECO:0000313\|EMBL:KDO70260.1}
TAIR10	AT1G13635.2	6E-107	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77327316	77330026	+
GWHAAZE00000006	mRNA	77327316	77330026	+
GWHAAZE00000006	exon	77327316	77327679	+
GWHAAZE00000006	exon	77328985	77329042	+
GWHAAZE00000006	exon	77329162	77329245	+
GWHAAZE00000006	exon	77329428	77329614	+
GWHAAZE00000006	exon	77329748	77330026	+
GWHAAZE00000006	CDS	77327316	77327679	+
GWHAAZE00000006	CDS	77328985	77329042	+
GWHAAZE00000006	CDS	77329162	77329245	+
GWHAAZE00000006	CDS	77329428	77329614	+
GWHAAZE00000006	CDS	77329748	77330026	+

Transcript Sequence
>GWHTAAZE022743 ATGTCTAAGGAAAATGGCAGAGGACTTGTTTCGGAGAAGAAAAAAAGCAACAGTCCCAGAGAAAAGGAGAAGGCAAACCATAGCTTGTTGTCCAAACACCTGAAAAAAGTTTATCCAACAGGGTTACCTAAAACCAGTTCGCACCTATCCTTGTCTTCACTATCCTTATCCTTGTCACAGAGTTCAAATGATTCTTTCACAAGTTCTACTTCTACTCTAGAACAGAAGATATCATTAGCCCTGCGTTTGATAGCGCAATCTGGAAGGAGACAAGTATCAATTCCTAAAAGTGTTCAACAAGTATGTCAGAGTCCCGGTGGTGAAGAAGGCTTGAAGAGGTGCAATTGGATTACAAAGAATAGTGATAAAGTTTATGTACAATTTCATGATGAGTGCTGGGGAGTTCCAGTTTATGACGACAATGAATTGTTCGAGTTGCTCGCATTGTCGGGTATGCTGATGGATTACAACTGGACTGAAATTCTAAAAAGGAAGCAACTATTCAGAGAAGCTTTTGGTGGATTTGATCCAAACACTGTTGCAAAAATGGGGGAGAAAGAGATAATGGAAATAGCCTCCAACAAAGCAATAATGTTAGCCGAAAGCAGAGTAAGGTGCATAGTTGACAATGCCAAATGCATAATCAAGGCAAGTTCCTTTTTTAATTCAATATTCCTTCACAAACTTATTCGAATTGTAAAGGAAGTAGGATCATTCAGTGGGTACATGTGGGGATATGTGGATTACAAGCCAATAATAAACGGATACAGATACCCAAGAAATGTACCATTGAGGGCACCCAAGGCCGAGGCTATTAGCAGGGATTTGCTGAAACGTGGCTTTCGTTTTGTGGGGCCAGTCATTGTCTACTCCTTCATGCAAGCTGCTGGTATGAGTATTGACCATCTCGTTGACTGCTTTAGGTTTACTGAATGCGTAAGCCTTGCTGAAAGGCCATGGAGGCATGTCTAA

Network for GWHGAAZE022713

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03352.14	Adenine_glyco	120	308	2.30E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01246	tag	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0008725	molecular_function	DNA-3-methyladenine glycosylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.501
	SRR3591706	second leaf	4.218
	SRR3591707	mature leaf	0.136
	SRR3591708	Shoot apex	1.725
	SRR3591709	Stem	233.587
	SRR3591710	White floral bud	0.739
	SRR3591711	White flower	0.612
	SRR3591712	Green floral bud	1.234
	SRR3591713	Yellow flower	0.111
SRP173429	SRR8316895	Juvenile bud stage	3.377
	SRR8316896	Juvenile bud stage	1.572
	SRR8316897	Juvenile bud stage	0.700
	SRR8316894	Third green stage	0.924
	SRR8316900	Third green stage	0.734
	SRR8316901	Third green stage	1.240
	SRR8316898	Complete white stage	0.103
	SRR8316899	Complete white stage	1.156
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.121
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.543
	SRR6706287	Light intensity 50%	0.354
	SRR6706288	Light intensity 20%	0.287
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.413
	CNS0095593	Slightly white alabastrum(diploid) 2	1.060
	CNS0095594	Slightly white alabastrum(diploid) 3	1.105
	CNS0095595	Whole white alabastrum(diploid) 2	0.157
	CNS0095596	Whole white alabastrum(diploid) 3	0.311
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.988
	CNS0095599	Silvery flower (diploied) 2	1.112
	CNS0095600	Silvery flower (diploied) 3	0.071
	CNS0095601	Golden flower (diploid) 1	0.143
	CNS0095602	Golden flower (diploid) 2	0.263
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.123
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.077
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.937
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.665
	CNS0095610	Silvery flower (tetraploid) 1	0.262
	CNS0095611	Silvery flower (tetraploid) 2	0.541
	CNS0095612	Silvery flower (tetraploid) 3	0.095
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.069
CRA001975	CRR073297	Stem 1	0.836
	CRR073298	Stem 2	1.147
	CRR073299	Stem 3	0.321
	CRR073300	Leaf 1	0.061
	CRR073301	Leaf 2	0.304
	CRR073302	Leaf 3	0.507
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	10.626
	CRR073319	Tawny withering 2	9.473
	CRR073320	Tawny withering 3	19.752