Gene detail

Detail information of GWHGAAZE022708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010261441.1	0	PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Nelumbo nucifera]
Swissprot	tr\|Q9LRB5\|LHT2_ARATH	0.000004	Lysine histidine transporter 2
trEMBL	tr\|B9T738\|B9T738_RICCO	0	Amino acid transporter, putative {ECO:0000313\|EMBL:EEF28328.1}
TAIR10	AT3G30390.2	1E-164	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77289224	77291344	+
GWHAAZE00000006	mRNA	77289224	77291344	+
GWHAAZE00000006	exon	77289224	77289665	+
GWHAAZE00000006	exon	77289834	77289986	+
GWHAAZE00000006	exon	77290100	77290303	+
GWHAAZE00000006	exon	77290654	77291119	+
GWHAAZE00000006	exon	77291206	77291344	+
GWHAAZE00000006	CDS	77289224	77289665	+
GWHAAZE00000006	CDS	77289834	77289986	+
GWHAAZE00000006	CDS	77290100	77290303	+
GWHAAZE00000006	CDS	77290654	77291119	+
GWHAAZE00000006	CDS	77291206	77291344	+

Transcript Sequence
>GWHTAAZE022738 ATGACAATCAAATCACAGAATCATCACAACAGCAAGTCCTCAAGAAAGAAGAAGAAAGATGCCGTGTCCCTTGCAATTAACGAGAAAGCTCCTCTATTACCCAAAAAGAAAGGGAGAGATGGGGAGCACAGTGAATTCAATGGAGCATCTTTCATTGGGGCAGTGTTCAATCTATCCACTACTATTATTGGTGCTGGTATTATGGCCCTCCCTGCTGCTATTAAGGTCCTAGGCCTCGCCCCCGGCATCGCCATTATCCTACTGGTCGCGGTTTTATCGGAGGCTTCTGTTAGTATGTTGCTCAAGTTCAGTGGAAATGGGAAATCAAATTCTTATGGAGGGGTCATGGGGGATGCCTTTGGGAATGTTGGAAAGGCAGTTTTACAACTTTGTGTCGTTATAAACAATATTGGTACACTTATTGTTTACATGATCATAATTGGTGATGTTTTATCTGGGACAACTTCAAGTGGGGTTCATCATGCTGGTGTATTACAAGGGTGGTTTGGAGAACAATGGTGGAATGGGCGCTTCTTTGTTCTTCTTTTCACAACTCTTGGTGTCTTTGCACCACTCGCATGCCTTAAACGAATCGATTCATTGAAATTTACGTCGGCCGTAGCAGTTGCACTGGCGCTCCTTTTCCTTGTAATTACAGCAGGAATCACAGTTGTTAAGATTTCAAATGGAAGTATTGGAATGCCCAGACTGCTTCCCGAAATTACTGATGTTAATTCGGTATGGAAGCTATTCACAGTGGTCCCTGTTCTCGTCATGGCCTATATCTGCCACTTTAATGTGCATACTATTGGGAATGAGCTTGAAGATCCTTCCCTAATAAAACCAGTTGTGCAAACTTCGTTGGCACTATGCTCAACTATTTACATAATGACTAGCTTTTTTGGGTTCCTTCTCTTCGGTGACTCGACCCTAGATGACGTGCTGGCTAACTTTGACACCAACCTCGGCATCCCTTACAGTTCTCAGCTCAATGATGCAGTTCGCCTTAGCTATGCCCTTCACCTCATGCTTGTATTCCCGATAGTATTTTATCCACTTCGGCTAAATTCAGATGGAATCTTGTTTCCCTCAGCCAGGCCTTTGGCTTCAGATAATTATCGTTTTGGTTCGATCACCATGGTGCTCATTTGTATTATATTCTTGGGTGCAAATTTTATACCTAGCATTTGGGATGCTTTTCAGTTCACTGGAGCAACAGCCGCAGTTTGCCTCGGGTTTATCTTCCCTGCCGCTATTACTCTGAGGGATATTTATGGCATAGCTACAAAGAAAGACAAGATTTTGTCTGTGCTTATGATTGGTCTAGCTGTGTTTGCCAATTTGGTGGCTATGTATAGCGATGCCTATACAATATTCAAAAGGAATGCATCTACTCGTGCTTGA

Network for GWHGAAZE022708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	49	451	1.40E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14207	SLC38A2, SNAT2	Protein digestion and absorption	map04974
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.951
	SRR3591706	second leaf	12.045
	SRR3591707	mature leaf	17.764
	SRR3591708	Shoot apex	37.293
	SRR3591709	Stem	41.833
	SRR3591710	White floral bud	11.882
	SRR3591711	White flower	15.667
	SRR3591712	Green floral bud	2.265
	SRR3591713	Yellow flower	75.470
SRP173429	SRR8316895	Juvenile bud stage	14.104
	SRR8316896	Juvenile bud stage	7.993
	SRR8316897	Juvenile bud stage	13.099
	SRR8316894	Third green stage	4.730
	SRR8316900	Third green stage	6.505
	SRR8316901	Third green stage	8.556
	SRR8316898	Complete white stage	23.233
	SRR8316899	Complete white stage	36.274
	SRR8316903	Complete white stage	42.771
	SRR8316902	Silver flowering stage	16.248
	SRR8316904	Silver flowering stage	24.191
	SRR8316905	Silver flowering stage	13.866
	SRR8316906	Gold flowering stage	54.516
	SRR8316907	Gold flowering stage	38.240
	SRR8316908	Gold flowering stage	45.486
SRP132670	SRR6706286	Control	21.043
	SRR6706287	Light intensity 50%	13.481
	SRR6706288	Light intensity 20%	8.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.761
	CNS0095593	Slightly white alabastrum(diploid) 2	17.321
	CNS0095594	Slightly white alabastrum(diploid) 3	11.908
	CNS0095595	Whole white alabastrum(diploid) 2	14.988
	CNS0095596	Whole white alabastrum(diploid) 3	3.929
	CNS0095597	Whole white alabastrum(diploid) 4	9.098
	CNS0095598	Silvery flower (diploied) 1	73.446
	CNS0095599	Silvery flower (diploied) 2	68.362
	CNS0095600	Silvery flower (diploied) 3	118.317
	CNS0095601	Golden flower (diploid) 1	74.894
	CNS0095602	Golden flower (diploid) 2	217.405
	CNS0095603	Golden flower (diploid) 3	212.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.645
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.101
	CNS0095610	Silvery flower (tetraploid) 1	39.469
	CNS0095611	Silvery flower (tetraploid) 2	44.730
	CNS0095612	Silvery flower (tetraploid) 3	15.097
	CNS0095613	Golden flower (tetraploid) 1	38.944
	CNS0095614	Golden flower (tetraploid) 2	56.682
	CNS0095615	Golden flower (tetraploid) 3	267.389
CRA001975	CRR073297	Stem 1	20.852
	CRR073298	Stem 2	14.852
	CRR073299	Stem 3	20.252
	CRR073300	Leaf 1	11.351
	CRR073301	Leaf 2	12.100
	CRR073302	Leaf 3	6.847
	CRR073303	Juvenile bud 1	12.046
	CRR073304	Juvenile bud 2	10.243
	CRR073305	Juvenile bud 3	25.462
	CRR073306	Third green 1	7.901
	CRR073307	Third green 2	8.639
	CRR073308	Third green 3	7.231
	CRR073309	Second white 1	15.915
	CRR073310	Second white 2	8.959
	CRR073311	Second white 3	11.218
	CRR073312	Silver flowering 1	31.934
	CRR073313	Silver flowering 2	34.832
	CRR073314	Silver flowering 3	32.303
	CRR073315	Gold flowering 1	12.536
	CRR073316	Gold flowering 2	20.938
	CRR073317	Gold flowering 3	18.792
	CRR073318	Tawny withering 1	28.955
	CRR073319	Tawny withering 2	48.443
	CRR073320	Tawny withering 3	19.617