Gene detail

Detail information of GWHGAAZE022703

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010257855.1	2.64683E-38	PREDICTED: uncharacterized N-acetyltransferase ycf52 [Nelumbo nucifera]
trEMBL	tr\|W9RAS9\|W9RAS9_9ROSA	3E-38	Putative N-acetyltransferase ycf52 {ECO:0000313\|EMBL:EXB44942.1}
TAIR10	AT1G26220.1	9E-30	Acyl-CoA N-acyltransferases (NAT) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77172239	77175780	+
GWHAAZE00000006	mRNA	77172239	77175780	+
GWHAAZE00000006	exon	77172239	77172417	+
GWHAAZE00000006	exon	77172604	77173001	+
GWHAAZE00000006	exon	77175356	77175780	+
GWHAAZE00000006	CDS	77172239	77172417	+
GWHAAZE00000006	CDS	77172604	77173001	+
GWHAAZE00000006	CDS	77175356	77175780	+

Transcript Sequence
>GWHTAAZE022733 ATGTGCCATCTAAATATCTCGGCTAAGGTTCGTGTTTTTATTTGGCCCGTTTACTCGGGTTCATTGCCTGTTAAAGCTGCGCTAATTCAGCGCCATGTGCAAGTGAGCCCGCAATGTCCCTGCTGCGATTCTGAGTCAGAATATGATTTTCATGCCTTGGTTGGTTACCCAGTAGCCCGCGCATTGAACTTCCTTGAGCAGTGGCGCCATGCCCAGCAAAGCCATACTGGGTCTGCCAATTTTGATGAAGGTGAAAGAGATTTCAAATGGTTCAAGCCGGAGTCAGGGAGTTTGAAATGCAATATTGACGGGGCAGACTTTGAAGTGGCAAACCGGGTGGGAGCGGGCTTCGTTTTAAGGGACGAAGACGGCCAATTTCTTTGCGCAAAAAACAAGCTTTTAGCAACTCTGTTGAATCCTCTTTCGGCCGAGGCAATAAGCTGCAAGGAGGCGTTGTCATGGATCAAAGATGCCGGTCTATCAAATATTAACGTAGAATCATATGCCCTTCTTTTTATTCTCGCCTTTCATAACGATTTTCCCGATTCTTCGCTTTTAGGTGCCATGATTAACGAGTTGATACTCCTAAAAATGCTTCTCCACGGCAGCATATCCATTCCCCTCCGTTCTCCCCTCCATCTCAAATCCCCTCCGACCCAACCCAGACACATCGCCGTTTCATCCCACTCTCCGCTGACCACCGCATACTCCATCTCCGATGAGGAGCTCGAATCCCGAGGCTTCAGCCTCCGCCGCACCATCACCGACCTCAACCTTGACCAACTCAACACCGTATTCGTGTCCGTTGGATTCCCCAGACGCGACACGGACAAGATACGTATAGCGCTTGAGAACACGGACACGATGCTGTGGGTGGAGTACGAGAAGAGCAAGAAGCCGGTGGCATTTGCTAGAGCGACGGGGATGGCGTGTTCAATGCCATCATATGGGATGTGGTGGTGGACCCCAGTTTCCAAGGGTTTGGTTTGGGTAAGGCTGTGA

Network for GWHGAAZE022703

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13966.7	zf-RVT	4	60	2.00E-09
PF13456.7	RVT_3	102	193	5.30E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22450	SNAT	Metabolic pathways	map01100
K22450	SNAT	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0004523	molecular_function	RNA-DNA hybrid ribonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.501
	SRR3591706	second leaf	18.453
	SRR3591707	mature leaf	26.617
	SRR3591708	Shoot apex	7.735
	SRR3591709	Stem	3.796
	SRR3591710	White floral bud	4.856
	SRR3591711	White flower	4.430
	SRR3591712	Green floral bud	4.593
	SRR3591713	Yellow flower	2.519
SRP173429	SRR8316895	Juvenile bud stage	2.169
	SRR8316896	Juvenile bud stage	2.562
	SRR8316897	Juvenile bud stage	2.027
	SRR8316894	Third green stage	1.548
	SRR8316900	Third green stage	4.226
	SRR8316901	Third green stage	4.437
	SRR8316898	Complete white stage	0.787
	SRR8316899	Complete white stage	3.727
	SRR8316903	Complete white stage	1.819
	SRR8316902	Silver flowering stage	0.911
	SRR8316904	Silver flowering stage	0.901
	SRR8316905	Silver flowering stage	0.931
	SRR8316906	Gold flowering stage	1.753
	SRR8316907	Gold flowering stage	3.288
	SRR8316908	Gold flowering stage	2.714
SRP132670	SRR6706286	Control	5.600
	SRR6706287	Light intensity 50%	5.538
	SRR6706288	Light intensity 20%	4.995
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.417
	CNS0095593	Slightly white alabastrum(diploid) 2	4.342
	CNS0095594	Slightly white alabastrum(diploid) 3	3.643
	CNS0095595	Whole white alabastrum(diploid) 2	4.231
	CNS0095596	Whole white alabastrum(diploid) 3	4.716
	CNS0095597	Whole white alabastrum(diploid) 4	2.996
	CNS0095598	Silvery flower (diploied) 1	4.311
	CNS0095599	Silvery flower (diploied) 2	2.555
	CNS0095600	Silvery flower (diploied) 3	1.431
	CNS0095601	Golden flower (diploid) 1	2.949
	CNS0095602	Golden flower (diploid) 2	2.699
	CNS0095603	Golden flower (diploid) 3	2.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.632
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.357
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.386
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.998
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.672
	CNS0095610	Silvery flower (tetraploid) 1	1.189
	CNS0095611	Silvery flower (tetraploid) 2	2.337
	CNS0095612	Silvery flower (tetraploid) 3	2.079
	CNS0095613	Golden flower (tetraploid) 1	1.355
	CNS0095614	Golden flower (tetraploid) 2	1.185
	CNS0095615	Golden flower (tetraploid) 3	0.738
CRA001975	CRR073297	Stem 1	6.614
	CRR073298	Stem 2	6.739
	CRR073299	Stem 3	10.068
	CRR073300	Leaf 1	5.283
	CRR073301	Leaf 2	7.078
	CRR073302	Leaf 3	8.336
	CRR073303	Juvenile bud 1	4.016
	CRR073304	Juvenile bud 2	3.931
	CRR073305	Juvenile bud 3	6.285
	CRR073306	Third green 1	3.035
	CRR073307	Third green 2	0.877
	CRR073308	Third green 3	2.283
	CRR073309	Second white 1	5.252
	CRR073310	Second white 2	3.530
	CRR073311	Second white 3	2.261
	CRR073312	Silver flowering 1	5.193
	CRR073313	Silver flowering 2	5.651
	CRR073314	Silver flowering 3	4.698
	CRR073315	Gold flowering 1	80.660
	CRR073316	Gold flowering 2	74.114
	CRR073317	Gold flowering 3	87.120
	CRR073318	Tawny withering 1	8.742
	CRR073319	Tawny withering 2	5.983
	CRR073320	Tawny withering 3	6.670