Gene detail

Detail information of GWHGAAZE022682

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006353876.1	1.24016E-16	PREDICTED: kinesin-like protein KIF22-like isoform X2 [Solanum tuberosum]
trEMBL	tr\|M1BAI0\|M1BAI0_SOLTU	2E-17	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT5G23910.1	1E-13	ATP binding microtubule motor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76766350	76771070	+
GWHAAZE00000006	mRNA	76766350	76771070	+
GWHAAZE00000006	exon	76766350	76766541	+
GWHAAZE00000006	exon	76767714	76767791	+
GWHAAZE00000006	exon	76767980	76767989	+
GWHAAZE00000006	exon	76768073	76768202	+
GWHAAZE00000006	exon	76768810	76768831	+
GWHAAZE00000006	exon	76769395	76769463	+
GWHAAZE00000006	exon	76769639	76769677	+
GWHAAZE00000006	exon	76769810	76769870	+
GWHAAZE00000006	exon	76770738	76771070	+
GWHAAZE00000006	CDS	76766350	76766541	+
GWHAAZE00000006	CDS	76767714	76767791	+
GWHAAZE00000006	CDS	76767980	76767989	+
GWHAAZE00000006	CDS	76768073	76768202	+
GWHAAZE00000006	CDS	76768810	76768831	+
GWHAAZE00000006	CDS	76769395	76769463	+
GWHAAZE00000006	CDS	76769639	76769677	+
GWHAAZE00000006	CDS	76769810	76769854	+
GWHAAZE00000006	three_prime_UTR	76769855	76769870	+
GWHAAZE00000006	three_prime_UTR	76770738	76771070	+

Transcript Sequence
>GWHTAAZE022712 ATGTCCGACGGTGGTAGTCACCGCGGTCGCGGTGGTGGCCGTGGGGGTCAATCTTCAGCCCATTGGAAGCCCCCTGGTGTGGCTCCATTTCTTACCCCGGCGAGGCCTAGAGCTCCCACTCCATCTCGGCCTCGTACTTCAGGTCCAGCTCCTGCTCCAAGTCCAGCTCCTGCTCCTCCTCCTCCTCCGCAGGCAGATAGTAGGACACTAAGTAAGATAGTGAAGGCTATGTTGGCATTCGGAGTACATACTGCACGCAGTGCCCTGCAGTGCCCTGCAGAGTTGTATTCTATGTTGCGCATGTTTTCTTTTCTTGTTCTAGTTTCTTTTGAACTTGTTATAATGTCTTGCTTGTTCTTGTAGGACTCCATTATTCAAGTTTTTCTTCACTATTTGAACACCGCTTCTGAGAAAGATTTGAAAACCGTGAAGGGTCTCGGACATCAAAGAATTGATTACATTCTTCAATTGCGCGAAGAATCTTCAGAACCCTTCATGAGTGTGGAAGACTTGCAGGAAATAAAACTTTCACCAAAGGAGGTGAACAACCTCTTGAGAGATTATGCGGCAGATATTTTTCACTAGATGAGATGGAGTAGAGGTTCGTTATGAGTCGGTCTGTTTCGGAATGATATAGAGCAGTCTCTTACCAGAAAGAATAGTTTAAGTTTCTCCCTTCCCTTAGCTAGGATTACATGATAAAACTGTCGTATTGCCCTCTGGTTTCCAAAATACAGGTTAGGCCATAAACATGGGCATGGATTGGGACTCGGTATAAAGTTTTCCTTGAAATGACAAATGCACTTTGTAATTATAATTTTTGCAGTCGGTACGAATTACATTCAGGATTAAGCTAGGAACCCCTTGAATCCACTTGAAAAAAGTGAAAAAACTAATACGGTGTAGAAGTTTTTTATTATAAAGGGACTTTAGA

Network for GWHGAAZE022682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12836.8	HHH_3	131	174	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10403	KIF22	Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.045
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.077
	SRR3591709	Stem	0.102
	SRR3591710	White floral bud	0.175
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.653
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.475
	SRR8316896	Juvenile bud stage	3.680
	SRR8316897	Juvenile bud stage	1.132
	SRR8316894	Third green stage	1.718
	SRR8316900	Third green stage	7.367
	SRR8316901	Third green stage	8.681
	SRR8316898	Complete white stage	2.746
	SRR8316899	Complete white stage	5.993
	SRR8316903	Complete white stage	2.920
	SRR8316902	Silver flowering stage	0.835
	SRR8316904	Silver flowering stage	0.487
	SRR8316905	Silver flowering stage	0.669
	SRR8316906	Gold flowering stage	0.667
	SRR8316907	Gold flowering stage	0.249
	SRR8316908	Gold flowering stage	0.314
SRP132670	SRR6706286	Control	3.934
	SRR6706287	Light intensity 50%	4.651
	SRR6706288	Light intensity 20%	4.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.762
	CNS0095593	Slightly white alabastrum(diploid) 2	6.559
	CNS0095594	Slightly white alabastrum(diploid) 3	4.009
	CNS0095595	Whole white alabastrum(diploid) 2	5.875
	CNS0095596	Whole white alabastrum(diploid) 3	9.659
	CNS0095597	Whole white alabastrum(diploid) 4	6.508
	CNS0095598	Silvery flower (diploied) 1	0.941
	CNS0095599	Silvery flower (diploied) 2	0.288
	CNS0095600	Silvery flower (diploied) 3	2.589
	CNS0095601	Golden flower (diploid) 1	1.261
	CNS0095602	Golden flower (diploid) 2	0.741
	CNS0095603	Golden flower (diploid) 3	0.759
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.655
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.867
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.116
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.564
	CNS0095610	Silvery flower (tetraploid) 1	0.937
	CNS0095611	Silvery flower (tetraploid) 2	1.547
	CNS0095612	Silvery flower (tetraploid) 3	1.732
	CNS0095613	Golden flower (tetraploid) 1	0.321
	CNS0095614	Golden flower (tetraploid) 2	0.618
	CNS0095615	Golden flower (tetraploid) 3	0.059
CRA001975	CRR073297	Stem 1	2.035
	CRR073298	Stem 2	2.067
	CRR073299	Stem 3	1.672
	CRR073300	Leaf 1	3.595
	CRR073301	Leaf 2	4.505
	CRR073302	Leaf 3	2.500
	CRR073303	Juvenile bud 1	2.551
	CRR073304	Juvenile bud 2	2.166
	CRR073305	Juvenile bud 3	1.466
	CRR073306	Third green 1	1.073
	CRR073307	Third green 2	0.735
	CRR073308	Third green 3	0.862
	CRR073309	Second white 1	0.745
	CRR073310	Second white 2	0.451
	CRR073311	Second white 3	0.163
	CRR073312	Silver flowering 1	0.658
	CRR073313	Silver flowering 2	0.016
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.071
	CRR073316	Gold flowering 2	0.347
	CRR073317	Gold flowering 3	0.277
	CRR073318	Tawny withering 1	0.152
	CRR073319	Tawny withering 2	0.743
	CRR073320	Tawny withering 3	0.044