Gene detail

Detail information of GWHGAAZE022649

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27037.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003109488.1	2E-17	serine/threonine protein kinase
Swissprot	tr\|P51568\|AFC3_ARATH	9E-45	Serine/threonine-protein kinase AFC3
trEMBL	tr\|F6HFP0\|F6HFP0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50925.1}
TAIR10	AT3G25840.1	4E-179	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76150276	76152879	+
GWHAAZE00000006	mRNA	76150276	76152879	+
GWHAAZE00000006	exon	76150276	76150487	+
GWHAAZE00000006	exon	76150915	76151021	+
GWHAAZE00000006	exon	76151272	76151428	+
GWHAAZE00000006	exon	76151545	76151836	+
GWHAAZE00000006	exon	76151917	76152031	+
GWHAAZE00000006	exon	76152241	76152404	+
GWHAAZE00000006	exon	76152504	76152578	+
GWHAAZE00000006	exon	76152691	76152879	+
GWHAAZE00000006	CDS	76150276	76150487	+
GWHAAZE00000006	CDS	76150915	76151021	+
GWHAAZE00000006	CDS	76151272	76151428	+
GWHAAZE00000006	CDS	76151545	76151836	+
GWHAAZE00000006	CDS	76151917	76152031	+
GWHAAZE00000006	CDS	76152241	76152404	+
GWHAAZE00000006	CDS	76152504	76152578	+
GWHAAZE00000006	CDS	76152691	76152879	+

Transcript Sequence
>GWHTAAZE022679 ATGAGAGAAGAAGCGACGCCGACACGGGAGAGAAGAGAAGGAGAGACGACGCACGACGCTGGCTCAACGGGAGAGAGGAGAAGAGGCGACTCCACTTGCTACCACAGTACCACCATAATAAACCCTACTCTGGTTAATAAGCCCTGCCCAAAACAGATCGAGCAAGAAGAGAGAAGAGGAGAAGAAAATAGAAGAAGAGGAGATCTAACGAGTTTCTGTGCACTTATCTTCCAATTTGTCTTCCAGGAGAAAGGTGATGGTTTAGCAATTGAAAGGAGTGGCCTGCATGATAATTGGGATGATGCTGAGGGGTACTATAGCTATCGTTTTGGGGAAATACTTGATGGCCGATATGAGGTTGTTGCTGCTCATGGAAAAGGTGTCTTTTCAACAGTTGTTCGTGCAAAGGATCTTAGAGCTGGATCTGGTGACCCAGAAGAAGTGGCAATAAAAATTATACGTAATAATGACACAATGTACAAGGCTGGTTTGGAAGAGCTGGTTATATTAAAGAAGTTGGTGGGTGCGGACCCAGAGGACAAGCGTCACTGCGTTCGTTTTCTTTCTAGCTTTAAGTACCGGAATCATCTTTGTTTAGTATTTGAATCTCTTCATATGAATCTTCGTGAGGTTTTAAAGAAGTTTGGTCGTAATATTGGACTCAAACTAAGTGCTGTGAGAGCATATGCGAAGCAACTGTTTATCGCACTAAAGCATCTCAGAAATTGTGGTATCCTTCACAGTGACATTAAGCCAGATAACATGCTGGTAAATGATGCAAAAAATGTGCTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCGGGTAAAAATGAGATCACACCATATCTTGTTAGCCGCTTCTACCGTGCTCCTGAGATAATTCTGGGCTTGCCTTATGACCATCCCATGGACATCTGGTCGGTTGGTTGCTGTTTGTTTGAGCTTTATATTGGTAAAGTTCTTTTCCCTGGTTCAACAAACAATGACATGCTTCGACTTCACATGGAGTTAAAAGGTCCTTTTCCCAAGAAGATGCTTCGAAAGGGAGCATTTACGGGCCATCACTTTGACCAGGATTTGAATTTTCTTGTCACAGAGGAAGATCCTGTCACAAAGAAGATTATGAAGAGGTTGATTTTCAACTTCAAGCCGAAAGATTTTAGTACGATTGTTTTGAGCTCTCCTGGTGAGGATCCGAAGATGTTGGTCAACTTCAAAGATATCCTGGAAAAAATATTTGTGTTGGATCCAGATAAGAGAATTACAGTATCGCAAGCATTGAGCCATCCATTCATCACTGGCAAGTGA

Network for GWHGAAZE022649

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	119	433	5.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_DYRK-PRP4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.374
	SRR3591706	second leaf	16.290
	SRR3591707	mature leaf	15.214
	SRR3591708	Shoot apex	17.041
	SRR3591709	Stem	27.250
	SRR3591710	White floral bud	26.684
	SRR3591711	White flower	28.007
	SRR3591712	Green floral bud	23.716
	SRR3591713	Yellow flower	24.960
SRP173429	SRR8316895	Juvenile bud stage	22.969
	SRR8316896	Juvenile bud stage	36.786
	SRR8316897	Juvenile bud stage	15.271
	SRR8316894	Third green stage	13.209
	SRR8316900	Third green stage	20.112
	SRR8316901	Third green stage	20.819
	SRR8316898	Complete white stage	8.075
	SRR8316899	Complete white stage	26.640
	SRR8316903	Complete white stage	22.020
	SRR8316902	Silver flowering stage	10.366
	SRR8316904	Silver flowering stage	16.881
	SRR8316905	Silver flowering stage	6.840
	SRR8316906	Gold flowering stage	18.118
	SRR8316907	Gold flowering stage	17.479
	SRR8316908	Gold flowering stage	20.910
SRP132670	SRR6706286	Control	12.131
	SRR6706287	Light intensity 50%	14.665
	SRR6706288	Light intensity 20%	15.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.581
	CNS0095593	Slightly white alabastrum(diploid) 2	12.762
	CNS0095594	Slightly white alabastrum(diploid) 3	11.647
	CNS0095595	Whole white alabastrum(diploid) 2	13.166
	CNS0095596	Whole white alabastrum(diploid) 3	11.363
	CNS0095597	Whole white alabastrum(diploid) 4	11.003
	CNS0095598	Silvery flower (diploied) 1	14.916
	CNS0095599	Silvery flower (diploied) 2	11.096
	CNS0095600	Silvery flower (diploied) 3	17.666
	CNS0095601	Golden flower (diploid) 1	13.697
	CNS0095602	Golden flower (diploid) 2	23.127
	CNS0095603	Golden flower (diploid) 3	21.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.362
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.123
	CNS0095610	Silvery flower (tetraploid) 1	22.413
	CNS0095611	Silvery flower (tetraploid) 2	15.626
	CNS0095612	Silvery flower (tetraploid) 3	17.563
	CNS0095613	Golden flower (tetraploid) 1	7.289
	CNS0095614	Golden flower (tetraploid) 2	15.834
	CNS0095615	Golden flower (tetraploid) 3	18.657
CRA001975	CRR073297	Stem 1	21.710
	CRR073298	Stem 2	17.700
	CRR073299	Stem 3	5.592
	CRR073300	Leaf 1	19.415
	CRR073301	Leaf 2	17.272
	CRR073302	Leaf 3	4.134
	CRR073303	Juvenile bud 1	8.329
	CRR073304	Juvenile bud 2	4.505
	CRR073305	Juvenile bud 3	7.855
	CRR073306	Third green 1	2.998
	CRR073307	Third green 2	2.524
	CRR073308	Third green 3	3.023
	CRR073309	Second white 1	2.121
	CRR073310	Second white 2	4.614
	CRR073311	Second white 3	4.286
	CRR073312	Silver flowering 1	3.878
	CRR073313	Silver flowering 2	4.422
	CRR073314	Silver flowering 3	3.260
	CRR073315	Gold flowering 1	2.849
	CRR073316	Gold flowering 2	4.096
	CRR073317	Gold flowering 3	0.467
	CRR073318	Tawny withering 1	6.342
	CRR073319	Tawny withering 2	10.407
	CRR073320	Tawny withering 3	7.492