Gene detail

Detail information of GWHGAAZE022646

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KFK35062.1	2.82005E-40	hypothetical protein AALP_AA5G230000 [Arabis alpina]
COG	YP_001660978.1	2E-27	branched-chain alpha-keto acid dehydrogenase subunit E2
Swissprot	tr\|Q9SQI8\|ODP24_ARATH	9E-37	Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic (Precursor)
trEMBL	tr\|A0A087GYW0\|A0A087GYW0_ARAAL	1E-40	Uncharacterized protein {ECO:0000313\|EMBL:KFK35062.1}
TAIR10	AT3G25860.1	1E-26	2-oxoacid dehydrogenases acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76087856	76089851	-
GWHAAZE00000006	mRNA	76087856	76089851	-
GWHAAZE00000006	exon	76087856	76087927	-
GWHAAZE00000006	exon	76088337	76088411	-
GWHAAZE00000006	exon	76088519	76088808	-
GWHAAZE00000006	exon	76089527	76089595	-
GWHAAZE00000006	exon	76089668	76089851	-
GWHAAZE00000006	CDS	76089668	76089851	-
GWHAAZE00000006	CDS	76089527	76089595	-
GWHAAZE00000006	CDS	76088519	76088808	-
GWHAAZE00000006	CDS	76088337	76088411	-
GWHAAZE00000006	CDS	76087856	76087927	-

Transcript Sequence
>GWHTAAZE022676 ATGGATCTCCCCCGAGGTCTAGGCCAAGATCTTCATGCCCACACTCAGCTCCACCATGACCGAGGGAAAAATCGTCTCCTAGATCAAATCCGAAGCTCCAAAGGCGAGTCCGTCGTTGTTGTTGAGTCTGATAAAGCCGATATGGATGTTGAAACTTTTTACAATGGAATTGTGGTCGACGAAGCTAAAGCTTTGAGCTCCACATCTGCCGCTGAGCCTTTAGTTCCTCCACCGGCTCCTTCCAGTCTGCTAATTGTTGGGACCAGACCTTTTAGGCAGATTACAGCGGCAAATATTGAAGCGGCGGCTGTAATTACTCCAGTGAAGAGTGTCGTCCCCAATGTAGCTTTGATTTTTGCTCCTGCTGCTCCACCGAAAGTTGCATCTGCAACTAGTTTTGCTGAAATTCTAGGGTCCACCATTGTTCCTTTTACAACCATGCAAGCTGCAGTGTCTAAGAATATGTTGAAGAGTTTGTCTGTGCCAACATTCCGTGTGGGGTACCCTATGACAACTGATGCACTTGATGCTCTCTATGAGAAGGTGAAACCCAATGGTGTTACTATGACTGCTTTGCTAGAAAGGGCTGCGGCAATGGCCCTTGCCCAGCACCCAGTTGGGGCTATTATGGCTGTTGGTGCATCAAAGCCTACTGTTGTAGCTGGTGCAGATGGATTTTTCACCATTTAG

Network for GWHGAAZE022646

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00198.24	2-oxoacid_dh	140	206	3.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00627	DLAT, aceF, pdhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.205
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.147
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.092
	SRR8316896	Juvenile bud stage	0.287
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.063
	SRR8316900	Third green stage	0.717
	SRR8316901	Third green stage	0.141
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.094
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.264
	SRR6706287	Light intensity 50%	0.451
	SRR6706288	Light intensity 20%	0.224
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.012
	CNS0095593	Slightly white alabastrum(diploid) 2	0.123
	CNS0095594	Slightly white alabastrum(diploid) 3	0.689
	CNS0095595	Whole white alabastrum(diploid) 2	0.463
	CNS0095596	Whole white alabastrum(diploid) 3	1.190
	CNS0095597	Whole white alabastrum(diploid) 4	0.597
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.005
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.003
CRA001975	CRR073297	Stem 1	0.108
	CRR073298	Stem 2	0.185
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.043
	CRR073301	Leaf 2	0.655
	CRR073302	Leaf 3	0.347
	CRR073303	Juvenile bud 1	0.091
	CRR073304	Juvenile bud 2	0.133
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.280
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.092
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.383
	CRR073320	Tawny withering 3	0.000