Gene detail

Detail information of GWHGAAZE022643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006484457.1	2.179E-177	PREDICTED: ubiquitin receptor RAD23c-like [Citrus sinensis]
Swissprot	tr\|Q84L31\|RD23C_ARATH	2E-155	Ubiquitin receptor RAD23c
trEMBL	tr\|A0A068VGR8\|A0A068VGR8_COFCA	7E-176	Coffea canephora DH200=94 genomic scaffold, scaffold_673 {ECO:0000313\|EMBL:CDP19777.1}
TAIR10	AT3G02540.3	2E-97	Rad23 UV excision repair protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76047842	76054831	+
GWHAAZE00000006	mRNA	76047842	76054831	+
GWHAAZE00000006	exon	76047842	76047874	+
GWHAAZE00000006	exon	76048321	76048482	+
GWHAAZE00000006	exon	76049746	76049799	+
GWHAAZE00000006	exon	76051498	76051586	+
GWHAAZE00000006	exon	76051688	76051741	+
GWHAAZE00000006	exon	76051874	76052051	+
GWHAAZE00000006	exon	76053078	76053233	+
GWHAAZE00000006	exon	76053314	76053446	+
GWHAAZE00000006	exon	76053525	76053545	+
GWHAAZE00000006	exon	76053617	76053746	+
GWHAAZE00000006	exon	76053829	76053907	+
GWHAAZE00000006	exon	76054715	76054831	+
GWHAAZE00000006	CDS	76047842	76047874	+
GWHAAZE00000006	CDS	76048321	76048482	+
GWHAAZE00000006	CDS	76049746	76049799	+
GWHAAZE00000006	CDS	76051498	76051586	+
GWHAAZE00000006	CDS	76051688	76051741	+
GWHAAZE00000006	CDS	76051874	76052051	+
GWHAAZE00000006	CDS	76053078	76053233	+
GWHAAZE00000006	CDS	76053314	76053446	+
GWHAAZE00000006	CDS	76053525	76053545	+
GWHAAZE00000006	CDS	76053617	76053746	+
GWHAAZE00000006	CDS	76053829	76053907	+
GWHAAZE00000006	CDS	76054715	76054831	+

Transcript Sequence
>GWHTAAZE022673 ATGCAGTCTGGTACTGTTCAACTAGCTTTGCAGGTTGCTGATGTGAAGAAATCCATAGAAACTGTTCAAGGATCAGATGTTTATCCTGCTGCACAGCAAATGCTTATCCACAATGGGAAAGTGCTTAAAGACGGGACAACACTAGAAGAGAATAAAATTGCTGATAATAGCTTTATTGTCATCATGTTATCTAAGAATAAGAGCTCATCCGGTCAAGGTTCAAGCACATCAACTGCACCAACATCCAAGCCAAGTGCCCCACCTCCTACTTCGACTCCTGCTTCAACTGCAACTGCAACTGCAACAGCAACTCAAGCTCCTGTTCCAACTGTTACACCGACTGCATCTCTTCCTGTTCCAGCTGCAGCTCCTAACTCTTCAGTTCCTGCTGCGTCGGATACTGATGTCTATGGCAGTGCAGCATCCACTTTGGTTGCTGGAAACAATCTTGAAGGAGCAGTTCAGCAGATTCTAGACATGGGTGGAGGAACGTGGGACAGGGATACAGTGCTTCGTGCTCTACGTGCCGCTTACAACAATCCAGAGAGAGCTGTTGAATACTTATATTCTGGTATCCCTGAACAAGCTGAAGTTCCACCTGTGGCACGAGTGCCACCAAGTGGGCAAGCTGCAAATGCTCCAGCACATGTTCTCCAACCAACGCAACCAGCAGCAGCGGTTCCCTCCGCTGGACCAAATGCAAATCCTTTGGACCTCTTTCCTCAGGGCCTTCCAGAGATGGGTTCAAATGCTGGTGGTGCTGGCTCCCTTGATTTTCTACGTAGTAGCCCACAGGTTCTCTCTCTCTCTCTATATATATATATATATTTATATATATCTAACACACACAGAATTGTTTGCAAACCCACAGATCTTGCAGGGGTTGCCTGTGTTTTGTTGCAGCCCATGCTTCAGGAACTAGGGAAGCAGAATCCTCATCTGATGAGGCTCATTCAAGAGCACCAGGCTGATTTCCTTCGCCTGATCAATGAACCTTCTGAAGGCGGAGAGAACATATTGGGACAACTTGCTGCAGCAATGCCACAGGCTGTAACAGTTACACCCGAGGAGCGTGAAGCCATAGAGCGTCTTGAGGCAATGGGATTTGACAGAGCAATAGTGTTGGAGGTGTTCTTTGCCTGCAACAAGAATGAAGAGCTGGCTGCTAATTACCTCTTAGATCACATGCATGAATTTGAAGAGTGA

Network for GWHGAAZE022643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	7	65	1.20E-11
PF00627.32	UBA	153	188	4.20E-13
PF09280.12	XPC-binding	299	332	2.70E-11
PF00627.32	UBA	357	392	8.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10839	RAD23, HR23	Protein processing in endoplasmic reticulum	map04141
K10839	RAD23, HR23	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006289	biological_process	nucleotide-excision repair
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634	cellular_component	nucleus
GO:0003684	molecular_function	damaged DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	112.374
	SRR3591706	second leaf	63.381
	SRR3591707	mature leaf	62.898
	SRR3591708	Shoot apex	86.797
	SRR3591709	Stem	135.054
	SRR3591710	White floral bud	122.310
	SRR3591711	White flower	119.010
	SRR3591712	Green floral bud	103.584
	SRR3591713	Yellow flower	130.209
SRP173429	SRR8316895	Juvenile bud stage	63.442
	SRR8316896	Juvenile bud stage	92.201
	SRR8316897	Juvenile bud stage	43.308
	SRR8316894	Third green stage	36.724
	SRR8316900	Third green stage	91.911
	SRR8316901	Third green stage	94.050
	SRR8316898	Complete white stage	50.957
	SRR8316899	Complete white stage	125.555
	SRR8316903	Complete white stage	84.802
	SRR8316902	Silver flowering stage	61.824
	SRR8316904	Silver flowering stage	77.839
	SRR8316905	Silver flowering stage	42.782
	SRR8316906	Gold flowering stage	130.978
	SRR8316907	Gold flowering stage	124.253
	SRR8316908	Gold flowering stage	140.296
SRP132670	SRR6706286	Control	83.245
	SRR6706287	Light intensity 50%	83.267
	SRR6706288	Light intensity 20%	89.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.685
	CNS0095593	Slightly white alabastrum(diploid) 2	70.322
	CNS0095594	Slightly white alabastrum(diploid) 3	63.877
	CNS0095595	Whole white alabastrum(diploid) 2	56.146
	CNS0095596	Whole white alabastrum(diploid) 3	50.948
	CNS0095597	Whole white alabastrum(diploid) 4	52.979
	CNS0095598	Silvery flower (diploied) 1	72.184
	CNS0095599	Silvery flower (diploied) 2	69.034
	CNS0095600	Silvery flower (diploied) 3	127.629
	CNS0095601	Golden flower (diploid) 1	70.232
	CNS0095602	Golden flower (diploid) 2	121.921
	CNS0095603	Golden flower (diploid) 3	120.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.145
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	84.797
	CNS0095610	Silvery flower (tetraploid) 1	139.454
	CNS0095611	Silvery flower (tetraploid) 2	146.505
	CNS0095612	Silvery flower (tetraploid) 3	151.993
	CNS0095613	Golden flower (tetraploid) 1	107.675
	CNS0095614	Golden flower (tetraploid) 2	133.519
	CNS0095615	Golden flower (tetraploid) 3	139.776
CRA001975	CRR073297	Stem 1	96.273
	CRR073298	Stem 2	89.550
	CRR073299	Stem 3	106.957
	CRR073300	Leaf 1	91.640
	CRR073301	Leaf 2	97.999
	CRR073302	Leaf 3	85.833
	CRR073303	Juvenile bud 1	91.792
	CRR073304	Juvenile bud 2	94.949
	CRR073305	Juvenile bud 3	138.189
	CRR073306	Third green 1	76.519
	CRR073307	Third green 2	78.778
	CRR073308	Third green 3	74.653
	CRR073309	Second white 1	95.717
	CRR073310	Second white 2	75.806
	CRR073311	Second white 3	56.478
	CRR073312	Silver flowering 1	68.899
	CRR073313	Silver flowering 2	80.885
	CRR073314	Silver flowering 3	61.725
	CRR073315	Gold flowering 1	45.789
	CRR073316	Gold flowering 2	64.715
	CRR073317	Gold flowering 3	65.363
	CRR073318	Tawny withering 1	111.031
	CRR073319	Tawny withering 2	103.903
	CRR073320	Tawny withering 3	121.036