Gene detail

Detail information of GWHGAAZE022636

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282578.1	1.5831E-137	PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera]
Swissprot	tr\|Q8RWD0\|COL16_ARATH	1E-77	Zinc finger protein CONSTANS-LIKE 16
trEMBL	tr\|D7T949\|D7T949_VITVI	6E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27020.3}
TAIR10	AT1G25440.1	9E-56	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75899249	75900845	-
GWHAAZE00000006	mRNA	75899249	75900845	-
GWHAAZE00000006	exon	75899249	75899524	-
GWHAAZE00000006	exon	75899737	75900585	-
GWHAAZE00000006	exon	75900726	75900845	-
GWHAAZE00000006	CDS	75900726	75900845	-
GWHAAZE00000006	CDS	75899737	75900585	-
GWHAAZE00000006	CDS	75899249	75899524	-

Transcript Sequence
>GWHTAAZE022666 ATGGTGTCCGACAAAAAATTAGCCAACGTGGTCGGGGCCAAGACGGCTCGAGCCTGCGACAGTTGCATAAAAAAGCGTGCTCGGTTCTACTGTGCCACCGATGATGCGTTCCTATGCCAAAATGATTCATTATTGCCTACGTGGCACCAAGGATTCAAGAGGAAGGCTCGAACCCCGAGGCACCACCACAGAAAGAGTGTGACTCATCTTCACCGTGAAGCTAAATGGGAAGAGTCAGTGCGGGACCCACTTCAAAATCTTGTACCGGAGATTGGGAGTGAGGAGATGACGTGGCAAGAAGAGAATGAAGAGCAGCTTTTGTATAGGGTTCCCGTATTTGATCCGTTTGTTGCTGAGTTTTGTTTATTGGTGACTTCAAATGATCAGACGGCTGTGGTTGGCGGAGAGAAGGATCGGCCGAAAGTAGTTTTGAGTGATTGTGCTGGTCGTCATGATGATGGGATTAATGGTAATAGTTTATGTGATGATTTGCTTCCATGTGACATGGATCTTGCCGAATTTGCAGCTGACGTGGAGAGCTTACTTGGCAAGGCTCTCGACGAGGAATCTAAGTTCGATATGGAAGGATTAGGGATTTTGGATTGTAGAGAGAAGGGAGAAGAGTGTTCATTGGGTGATTGGAGAGTAAAGGTCGAAGAAGATGATGACGTGGAAGCTCATGCGGCTGTTATAGAGATTGATGATATGGCGAGGGAGCCGTTTGAGCTGAACTTTGACTATGATTCTCCTTCGATTTGTTGCGATCAAGAAGATAGAGGTAGAGCTGAAAATAAAGTTGTCCAAGCTAATGACTATGTTGTAGTTGGAGAAGAGAATAAGAAGAAAAATAAGGTGGTGTTGAGGCTAGATTGGGAAGGAGTGGTGGCGGCATGGGCTGACCAAAGGTGTCCTTGGACTACCGGTGACCGGCCAGAATTGGACGCTGATGATTGTTGGCCCGACAACATGGGTGGCTGTGGAACGGTTGATTACAGTAGTGCATACGGGGATCGTACGGGAGTAATTACGAGTGGACAGATGATGACATTGGATGAAGGGAGAGAAGCAAGAGTATTAAGGTATAGAGAAAAAAGGAGAACACGATTGTTTTCAAAGAAAATAAGGTACGAAGTTAGAAAGTTGAATGCGGAGAAGAGGCCTAGAATGAAAGGAAGGTTCGTTAAGAGGTCTAATTTTTCAACGCCTCATCCTCCTCCTCCTTTCCCGTTGCTTAACACCAAATAG

Network for GWHGAAZE022636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	354	396	9.30E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.714
	SRR3591706	second leaf	7.333
	SRR3591707	mature leaf	8.106
	SRR3591708	Shoot apex	8.383
	SRR3591709	Stem	8.257
	SRR3591710	White floral bud	0.226
	SRR3591711	White flower	0.959
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.684
SRP173429	SRR8316895	Juvenile bud stage	1.510
	SRR8316896	Juvenile bud stage	3.233
	SRR8316897	Juvenile bud stage	0.173
	SRR8316894	Third green stage	0.152
	SRR8316900	Third green stage	0.097
	SRR8316901	Third green stage	0.308
	SRR8316898	Complete white stage	0.597
	SRR8316899	Complete white stage	0.626
	SRR8316903	Complete white stage	0.957
	SRR8316902	Silver flowering stage	0.085
	SRR8316904	Silver flowering stage	0.131
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.475
	SRR8316907	Gold flowering stage	0.256
	SRR8316908	Gold flowering stage	0.106
SRP132670	SRR6706286	Control	1.093
	SRR6706287	Light intensity 50%	0.409
	SRR6706288	Light intensity 20%	0.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.786
	CNS0095593	Slightly white alabastrum(diploid) 2	2.410
	CNS0095594	Slightly white alabastrum(diploid) 3	3.672
	CNS0095595	Whole white alabastrum(diploid) 2	1.627
	CNS0095596	Whole white alabastrum(diploid) 3	0.816
	CNS0095597	Whole white alabastrum(diploid) 4	1.020
	CNS0095598	Silvery flower (diploied) 1	5.369
	CNS0095599	Silvery flower (diploied) 2	3.738
	CNS0095600	Silvery flower (diploied) 3	0.617
	CNS0095601	Golden flower (diploid) 1	7.615
	CNS0095602	Golden flower (diploid) 2	4.020
	CNS0095603	Golden flower (diploid) 3	4.668
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.011
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.099
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.520
	CNS0095610	Silvery flower (tetraploid) 1	0.875
	CNS0095611	Silvery flower (tetraploid) 2	1.863
	CNS0095612	Silvery flower (tetraploid) 3	0.626
	CNS0095613	Golden flower (tetraploid) 1	0.435
	CNS0095614	Golden flower (tetraploid) 2	0.780
	CNS0095615	Golden flower (tetraploid) 3	1.222
CRA001975	CRR073297	Stem 1	25.474
	CRR073298	Stem 2	23.328
	CRR073299	Stem 3	26.576
	CRR073300	Leaf 1	4.305
	CRR073301	Leaf 2	5.907
	CRR073302	Leaf 3	3.565
	CRR073303	Juvenile bud 1	2.128
	CRR073304	Juvenile bud 2	1.212
	CRR073305	Juvenile bud 3	5.742
	CRR073306	Third green 1	0.010
	CRR073307	Third green 2	0.300
	CRR073308	Third green 3	0.698
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.193
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.736
	CRR073314	Silver flowering 3	0.081
	CRR073315	Gold flowering 1	5.268
	CRR073316	Gold flowering 2	5.449
	CRR073317	Gold flowering 3	5.529
	CRR073318	Tawny withering 1	26.209
	CRR073319	Tawny withering 2	9.490
	CRR073320	Tawny withering 3	13.473