Gene detail

Detail information of GWHGAAZE022631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044333.1	4.18231E-79	C2H2 and C2HC zinc fingers superfamily protein [Theobroma cacao]
Swissprot	tr\|Q6S591\|JAG_ARATH	4E-42	Zinc finger protein JAGGED
trEMBL	tr\|A0A061E5A9\|A0A061E5A9_THECC	2E-79	C2H2 and C2HC zinc fingers superfamily protein {ECO:0000313\|EMBL:EOY00165.1}
TAIR10	AT1G68480.1	3E-34	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75748663	75750920	-
GWHAAZE00000006	mRNA	75748663	75750920	-
GWHAAZE00000006	exon	75748663	75749248	-
GWHAAZE00000006	exon	75749346	75749448	-
GWHAAZE00000006	exon	75749803	75749946	-
GWHAAZE00000006	exon	75750425	75750540	-
GWHAAZE00000006	exon	75750628	75750920	-
GWHAAZE00000006	CDS	75750628	75750920	-
GWHAAZE00000006	CDS	75750425	75750540	-
GWHAAZE00000006	CDS	75749803	75749946	-
GWHAAZE00000006	CDS	75749346	75749448	-
GWHAAZE00000006	CDS	75748663	75749248	-

Transcript Sequence
>GWHTAAZE022661 ATGTCACCAGAAGGGGTAGCAGAAAGACTGATAGAGAAGTCTCAAAGCTCGATCTCCTTTCTTCAACACCACTTGACTACTACCTCCATTCATCTCTTAGTCTCTCTCTCTCAAACTTCAAGTGTTAATTATTTAATTTCAAAAGCTCCTACTTATCTCTACCTCATCTCCACTACCTGCTCCCATCAGAAACGTTTTCTTTTCCTTTTACCCCCACCCCACCCTCATCTTATTTTTCTTCTGTCTTTCTCTGCTGGGTTACCCCCAAAACCCCAACCCCCCATGCCATGTAGGAGACCAGAAAGAAACCCATTAGACCTCAACAACTTACCGGACGATTACACTAGAGATACTACTCATCATCATGCTAAACAAATCCTTGAGGACACCTCTTCCTCTGTTGTTGCTGGAAGAGGAGGTGCCTATAGAAAGAAGAAAAACGGCGCAAAGGAAGCAAAAGACGAGAGCTCTAAAGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCCCTCGGTGGTCACATGAACCGCCACCGTCAAGAGAGAGAAACGGAAACACTGAACCGGGCCCGTCAACTAGTCTTCAGTAACGATAACATATTAGCCCCACCCCCACCCTCTCATCATCATCATCATCACCTGGGTGTGCACGGTTATCATCAAACTGGTAACATAGGTGTTGGTGATCCAACGCTACCATTCAGATCAGTTTACCCAACAACCAGCAGACTATTTTCCGCCTCTTCACCATCCACCGTGTTACCGCCGCCACCTCAGCAGCAGCAGCAGTATATGTACACATCACAGTCGCGTCTCGTCCCATACCAGTCGTCACAATATCCGCCGCCGCAGATAAATGATTACTTGGTAGGGCACGTGCTTCCCGGGAGCAGCAGCCATGGGCAGTACGGTCCCCAACATAATCCAAACTATGGGGGACCGTTGGGGTCTCCACCTGAAGGTAACAATAACTACACGTGCATTGGAGCACCGGTGGGGCACGCATTCGGCCACAGCAACAACGATGGAATTGGCAAAGGAGAAGGAGGAGGGAGTGGTGATGTGGCAATGCAAATGAGGAATCAGAATCGTGAGGAGGAGGGAGAGGGAGAGGGTTTGTTAGATTTGAATAGGATAAGGAGTAGCTATAATACTGCCGGGACACACAATCAGCATCAGCGCGGCTTGGATCATACTTCATTGATCAATCGGTATCAGGATGGATTCTAA

Network for GWHGAAZE022631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.716
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.617
	SRR3591711	White flower	0.241
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.367
	SRR8316896	Juvenile bud stage	0.122
	SRR8316897	Juvenile bud stage	0.287
	SRR8316894	Third green stage	0.135
	SRR8316900	Third green stage	0.211
	SRR8316901	Third green stage	0.275
	SRR8316898	Complete white stage	0.242
	SRR8316899	Complete white stage	1.238
	SRR8316903	Complete white stage	0.269
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.954
	SRR6706287	Light intensity 50%	1.030
	SRR6706288	Light intensity 20%	0.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.415
	CNS0095593	Slightly white alabastrum(diploid) 2	0.688
	CNS0095594	Slightly white alabastrum(diploid) 3	0.157
	CNS0095595	Whole white alabastrum(diploid) 2	0.428
	CNS0095596	Whole white alabastrum(diploid) 3	0.228
	CNS0095597	Whole white alabastrum(diploid) 4	0.441
	CNS0095598	Silvery flower (diploied) 1	0.942
	CNS0095599	Silvery flower (diploied) 2	0.197
	CNS0095600	Silvery flower (diploied) 3	0.051
	CNS0095601	Golden flower (diploid) 1	0.049
	CNS0095602	Golden flower (diploid) 2	0.240
	CNS0095603	Golden flower (diploid) 3	0.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.295
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.451
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.815
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.376
	CNS0095612	Silvery flower (tetraploid) 3	0.047
	CNS0095613	Golden flower (tetraploid) 1	0.157
	CNS0095614	Golden flower (tetraploid) 2	0.154
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	1.888
	CRR073298	Stem 2	1.355
	CRR073299	Stem 3	1.425
	CRR073300	Leaf 1	0.765
	CRR073301	Leaf 2	0.597
	CRR073302	Leaf 3	0.290
	CRR073303	Juvenile bud 1	2.226
	CRR073304	Juvenile bud 2	0.669
	CRR073305	Juvenile bud 3	2.315
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.045
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.036
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.042