Detail information of GWHGAAZE022629


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00628.12.33053E-42unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TZ53|A0A068TZ53_COFCA9E-43Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00628.1}
TAIR10AT1G25420.11E-32Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7570720375707997+
GWHAAZE00000006mRNA7570720375707997+
GWHAAZE00000006exon7570720375707339+
GWHAAZE00000006exon7570766075707792+
GWHAAZE00000006exon7570789075707997+
GWHAAZE00000006CDS7570720375707339+
GWHAAZE00000006CDS7570766075707792+
GWHAAZE00000006CDS7570789075707997+
Transcript Sequence

Network for GWHGAAZE022629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0223GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component
GO:0005839 proteasome core complex GOslim:cellular_component
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GOslim:molecular_function
Ubiquitin_UBC family Ubiquitin_UBC family
GO:0004175 endopeptidase activity GOslim:molecular_function
GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function
GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process
GO:0015031 protein transport GOslim:biological_process
GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist1471245.60E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.121
SRR3591706second leaf17.702
SRR3591707mature leaf14.030
SRR3591708Shoot apex14.990
SRR3591709Stem26.007
SRR3591710White floral bud31.281
SRR3591711White flower32.328
SRR3591712Green floral bud25.402
SRR3591713Yellow flower37.068
SRP173429 SRR8316895Juvenile bud stage 14.604
SRR8316896Juvenile bud stage 15.843
SRR8316897Juvenile bud stage 10.109
SRR8316894Third green stage 8.840
SRR8316900Third green stage 27.144
SRR8316901Third green stage 23.260
SRR8316898Complete white stage 23.757
SRR8316899Complete white stage 37.002
SRR8316903Complete white stage 33.469
SRR8316902Silver flowering stage13.833
SRR8316904Silver flowering stage25.983
SRR8316905Silver flowering stage10.931
SRR8316906Gold flowering stage 49.872
SRR8316907Gold flowering stage 47.613
SRR8316908Gold flowering stage 42.053
SRP132670SRR6706286Control56.036
SRR6706287Light intensity 50%60.168
SRR6706288Light intensity 20%66.531
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.735
CNS0095593Slightly white alabastrum(diploid) 211.832
CNS0095594Slightly white alabastrum(diploid) 312.714
CNS0095595Whole white alabastrum(diploid) 210.966
CNS0095596Whole white alabastrum(diploid) 39.994
CNS0095597Whole white alabastrum(diploid) 413.211
CNS0095598Silvery flower (diploied) 113.412
CNS0095599Silvery flower (diploied) 215.119
CNS0095600Silvery flower (diploied) 335.822
CNS0095601Golden flower (diploid) 115.036
CNS0095602Golden flower (diploid) 231.946
CNS0095603Golden flower (diploid) 330.674
CNS0095604Slightly white alabastrum(tetraploid) 115.567
CNS0095605Slightly white alabastrum(tetraploid) 214.196
CNS0095606Slightly white alabastrum(tetraploid) 324.815
CNS0095607Whole white alabastrum(tetraploid) 110.115
CNS0095608Whole white alabastrum(tetraploid) 29.357
CNS0095609Whole white alabastrum(tetraploid) 326.449
CNS0095610Silvery flower (tetraploid) 145.785
CNS0095611Silvery flower (tetraploid) 247.188
CNS0095612Silvery flower (tetraploid) 332.794
CNS0095613Golden flower (tetraploid) 124.585
CNS0095614Golden flower (tetraploid) 232.462
CNS0095615Golden flower (tetraploid) 334.781
CRA001975CRR073297Stem 118.463
CRR073298Stem 212.784
CRR073299Stem 315.514
CRR073300Leaf 121.319
CRR073301Leaf 219.590
CRR073302Leaf 326.069
CRR073303Juvenile bud 124.196
CRR073304Juvenile bud 228.590
CRR073305Juvenile bud 323.299
CRR073306Third green 122.265
CRR073307Third green 224.417
CRR073308Third green 318.917
CRR073309Second white 117.236
CRR073310Second white 214.118
CRR073311Second white 310.495
CRR073312Silver flowering 111.335
CRR073313Silver flowering 217.893
CRR073314Silver flowering 317.569
CRR073315Gold flowering 111.225
CRR073316Gold flowering 224.605
CRR073317Gold flowering 313.837
CRR073318Tawny withering 117.032
CRR073319Tawny withering 214.860
CRR073320Tawny withering 36.147