Gene detail

Detail information of GWHGAAZE022597

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280133.1	0	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Vitis vinifera]
COG	YP_113939.1	3E-92	ATP-dependent helicase HrpA
Swissprot	tr\|O22899\|DHX15_ARATH	8E-55	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|D7T8X8\|D7T8X8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26949.3}
TAIR10	AT2G01130.1	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75087590	75103602	-
GWHAAZE00000006	mRNA	75087590	75103602	-
GWHAAZE00000006	exon	75103333	75103602	-
GWHAAZE00000006	exon	75097909	75098063	-
GWHAAZE00000006	exon	75097744	75097831	-
GWHAAZE00000006	exon	75097205	75097450	-
GWHAAZE00000006	exon	75096057	75096152	-
GWHAAZE00000006	exon	75095485	75095673	-
GWHAAZE00000006	exon	75095212	75095371	-
GWHAAZE00000006	exon	75094997	75095127	-
GWHAAZE00000006	exon	75092861	75093028	-
GWHAAZE00000006	exon	75092493	75092762	-
GWHAAZE00000006	exon	75091224	75091415	-
GWHAAZE00000006	exon	75090677	75090880	-
GWHAAZE00000006	exon	75090511	75090580	-
GWHAAZE00000006	exon	75090206	75090354	-
GWHAAZE00000006	exon	75089266	75089571	-
GWHAAZE00000006	exon	75088801	75088860	-
GWHAAZE00000006	exon	75088123	75088233	-
GWHAAZE00000006	exon	75087590	75088039	-
GWHAAZE00000006	CDS	75103333	75103602	-
GWHAAZE00000006	CDS	75097909	75098063	-
GWHAAZE00000006	CDS	75097744	75097831	-
GWHAAZE00000006	CDS	75097205	75097450	-
GWHAAZE00000006	CDS	75096057	75096152	-
GWHAAZE00000006	CDS	75095485	75095673	-
GWHAAZE00000006	CDS	75095212	75095371	-
GWHAAZE00000006	CDS	75094997	75095127	-
GWHAAZE00000006	CDS	75092861	75093028	-
GWHAAZE00000006	CDS	75092493	75092762	-
GWHAAZE00000006	CDS	75091224	75091415	-
GWHAAZE00000006	CDS	75090677	75090880	-
GWHAAZE00000006	CDS	75090511	75090580	-
GWHAAZE00000006	CDS	75090206	75090354	-
GWHAAZE00000006	CDS	75089266	75089571	-
GWHAAZE00000006	CDS	75088801	75088860	-
GWHAAZE00000006	CDS	75088123	75088233	-
GWHAAZE00000006	CDS	75087590	75088039	-

Transcript Sequence
>GWHTAAZE022627 ATGGAATTAATAGAGGTGGAAAGGGAATTTGTGTTATATGAGAAACAAACACAAACGCAGTTCACCATGCATGACTTTGATATTCTTTTTCCTATGTCTGAATTGATTGGTGGTGGGTTTTCTCAGTTGATTAGTAGTGGTGTATCTCAGTTGATTAATAATAAGGTTAAGGGTGGTGAACTAAGTGCTGGGTATGATTTGCCTCTAGCTACTAAATATCATTATATAATTCATGGGTTTAACAATATAGATGCGATGAAGAGTGCCACAAATGATTATGCCTCCAATGAGATTGATGGTTTGAAATGGAAACTATCCCCACTTTTATGCAACGATGATAAGCAAGAAGTAGTCTTGAGGGAAAAAAGGGATAGAAGTGATTACAAGCAGATAGCAGCTTTGGCGAGCAAAATGGGCTTGTATAGCCAACTTTATGCAAAAGTAGTTGTTGTCAGTAAGGTTCCATTGCCCAACTACAGATTTGACCTAGATGATAGACGTCCACAGAGGGAGGTGACCTTGCCCCTCGGTGTAATTAGGAGAGTGGATGCTCATCTTCAAGAGTACTTTTCATTGAAACCTAGGAGTATGAATGTTTCACATGATAGTATGCTTTCAGGATCAAGCGGTAATGATGATATTGCTACTGACGAGGGGCTTTTTGATCAACCTGAGCCACTGCCACATAATAAGGCTGCCTTGGAGAAAATCATTTGGCAGAGAAGTTTGCAAATGCGCACTGAACAACAAGCTTGGCAGGAATCTCCAGAAGGTTTGAAGATGCTGGAATTTCGTAGAAGTCTCCCTGCATATAAAGATAAGCATGCAATATTAACTGCTGTTTCACAGAATCAGGTTGTTATCATCTCAGGTCAAACAGGTTGTGGGAAAACCACGCAGATTCCCCAATTCATTTTAGAATCTGAGATTGAGTCGAGTCGTGGGGGTATATGCAGTATCATATGTACTCAGCCAAGACGAATATCTGCTATATCGGTTTCTGAAAGAGTTTCTGCTGAGAGGGGGGAAAAGTTGGGTGAAACGGTTGGATATAAAGTTCGGCTAGAGGGTATGAAAGGAAGGGATACCCACCTCCTCTTCTGCACAACAGGTATTCTGTTGAGAAGATTACTGGTTGATAGGAACTTGAAGGGTGTAACTCATGTTATTGTGGATGAGATTCATGAGCGCGGGATGAATGAAGATTTTCTGTTGATTGTCCTAAAAGATCTACTTCCTCGACGGCCAGAGTTGAGGCTTATTTTGATGAGTGCAACCTTAGATCCAGAGCTCTTCTCGTCGTATTTTGGTGGGGCTCCAATGGTGCACATTCCAGGTTTTACTTATCCAGTACAAACTCACTTCCTGGAAGATATCCTGGAATTGACTGGATACAGATTGACACCTGACAATCAAATTGATGATTATGGCCAGGAAAAGACATGGAAAATGAATAAACAAGCTCCTAGAAAGAGAAAGACGCAAATTGCGTTGGCTGTTGAGGATACACTCAGAGCTGCTGATTTCAAGCAATATAGCCGACAAACACAGGAGTCTTTGTCATGCTGGATTCCTGATTGTATTGGTTTCAACCTTATAGAATATCTTTTATGCAAAATATGTGAGGAAAGGGCTGGTGCTGTTTTAGTTTTTATGACTGGGTGGGAAGATATAAGTTCTCTGAAGGATAAGCTCCAAGCCCATCCTGTTTTGGGAGATACAAGCCGGGTTTTAGTGCTGGCATGCCATGGTTCTATGGCCAGTTCGGAGCAGAAGTTAATCTTTGATAAGCAAGAAGGTGTGAAGAAAATAGTATTAGCTACTAACATTGCTGAAACCAGCATCACTATTGACGATGTGGTCTTTGTCGTTGACTGTGGAAAAGCCAAAGAGTCATCTTATGATGCATTGAATAATACTCCTTGTTTGCTTCCTTCCTGGATCTCTAAGGTTTCTGCTCAACAACGAAGAGGAAGAGCTGGCCGTGTTCAGCCAGGAGAATGTTACCATCTCTATCCCAGATGTGTATATGATGCTTTTGCAGATTATCAGTTACCAGAAATTTTAAGAACTCCTTTGCAATCTCTTTGTCTGCAAATCAAAAGTTTAAAACTTGGGGGCATTTCTCAGTTCTTATCAAGGGCTTTGCTGTCACCAGAGTTACTAGCGGTTCAGAATGCTGTTGAATATCTGAAAATCATAGGGGCATTAGACGAGAATGAAAATCTGACTGTTTTAGGGCACTATTTGACAATGCTTCCTATGGAACCCAAGCTCGGAAAGATGCTTATTCTTGGTGCTATTTTCAATTGCCTGGACCCAGTATTAACCGTTGTTGCTGGTCTTAGTGTTAGAGATCCTTTCTTAGCACCTCTTGACAAGAAGGATCTAGCAGAGGCTGCAAAAGCTCAGTTTTCCCATGATTACAGTGATCACCTTGCACTTGTGAGGGCATACGAGGGTTGGAAAGTTGCTGAAAGCCGTCTTATTGGATATGAATACTGCTGGACAAATTTTCTTTCTGTACAATCAATGAAAGCTATTGATTCTCTTAGAAGCGAGTTCCACACTTTGCTTAGTGAAACTGGCCTAGTTGATTGCAATTCAACCATCTGCAATGCATGGAGCTATGATGAACATCTTCTTCGTGCAGTTATTTGCTATGGCTTGTATCCCGGAATTTGCTCTGTTGTGCACAATGAGAAGTCGTTCTCATTGAAGACAATGGAGGACGGTAAGGTGCATCTGTACTCTGGTGGCCACTTAAAAATGATGGGTGGCTATTTGGAGTTCTTTATGAAACCTACCGTAGCAGTAATGTTTCAAACCTTAAGGCGAGAGCTTGATCAACTAATTCAGACCAAATTAGTGGATCCCAGGATAGAGATACGGTCCCATCACGAGCTTTTATCTGCAATACGGCTACTGATCTCAGAGAAGAAATGTGAGGGCAAATTTGTGTTCAACAATCAGGTGTCAGCTCGCATAGTCGCACCACTGGCACTGGGATCAAGGACAGAAAGTGGCCCCGGGGGTGATAATTCCAAGAGCCAGCTTCAAACACTGCTCACTCGGGCAGGGAATAATGCGCCAACCTACAAAACAACACAGTTGACAAACGGCCAATTTAGGGCAACTGTAGACCTAAATGGAGCAGAGATCACGGGGCGGCCTTGCAACAACAAGAAACAAGCAGAGAAGGATGCTGCAGCAGAGGCTCTGGAATGGCTTAAGGGAGGAAGCCACGAAAGTCGTGATTATGTTGAGCGTATGTCAATGATGCTTAAGAAGAGCAAAAAGGATCATCATAGTTGA

Network for GWHGAAZE022597

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	277	428	8.20E-08
PF00271.32	Helicase_C	535	663	2.70E-13
PF04408.24	HA2	727	802	5.80E-20
PF00035.27	dsrm	1015	1077	1.90E-08

Protein Sequence

>GWHPAAZE022613
MELIEVEREFVLYEKQTQTQFTMHDFDILFPMSELIGGGFSQLISSGVSQLINNKVKGGELSAGYDLPLATKYHYIIHGFNNIDAMKSATNDYASNEIDGLKWKLSPLLCNDDKQEVVLREKRDRSDYKQIAALASKMGLYSQLYAKVVVVSKVPLPNYRFDLDDRRPQREVTLPLGVIRRVDAHLQEYFSLKPRSMNVSHDSMLSGSSGNDDIATDEGLFDQPEPLPHNKAALEKIIWQRSLQMRTEQQAWQESPEGLKMLEFRRSLPAYKDKHAILTAVSQNQVVIISGQTGCGKTTQIPQFILESEIESSRGGICSIICTQPRRISAISVSERVSAERGEKLGETVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDPELFSSYFGGAPMVHIPGFTYPVQTHFLEDILELTGYRLTPDNQIDDYGQEKTWKMNKQAPRKRKTQIALAVEDTLRAADFKQYSRQTQESLSCWIPDCIGFNLIEYLLCKICEERAGAVLVFMTGWEDISSLKDKLQAHPVLGDTSRVLVLACHGSMASSEQKLIFDKQEGVKKIVLATNIAETSITIDDVVFVVDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKLGGISQFLSRALLSPELLAVQNAVEYLKIIGALDENENLTVLGHYLTMLPMEPKLGKMLILGAIFNCLDPVLTVVAGLSVRDPFLAPLDKKDLAEAAKAQFSHDYSDHLALVRAYEGWKVAESRLIGYEYCWTNFLSVQSMKAIDSLRSEFHTLLSETGLVDCNSTICNAWSYDEHLLRAVICYGLYPGICSVVHNEKSFSLKTMEDGKVHLYSGGHLKMMGGYLEFFMKPTVAVMFQTLRRELDQLIQTKLVDPRIEIRSHHELLSAIRLLISEKKCEGKFVFNNQVSARIVAPLALGSRTESGPGGDNSKSQLQTLLTRAGNNAPTYKTTQLTNGQFRATVDLNGAEITGRPCNNKKQAEKDAAAEALEWLKGGSHESRDYVERMSMMLKKSKKDHHS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.103
	SRR3591706	second leaf	12.816
	SRR3591707	mature leaf	13.469
	SRR3591708	Shoot apex	21.610
	SRR3591709	Stem	17.334
	SRR3591710	White floral bud	9.128
	SRR3591711	White flower	11.796
	SRR3591712	Green floral bud	11.248
	SRR3591713	Yellow flower	8.617
SRP173429	SRR8316895	Juvenile bud stage	14.900
	SRR8316896	Juvenile bud stage	19.010
	SRR8316897	Juvenile bud stage	12.913
	SRR8316894	Third green stage	8.423
	SRR8316900	Third green stage	18.909
	SRR8316901	Third green stage	18.547
	SRR8316898	Complete white stage	4.796
	SRR8316899	Complete white stage	21.315
	SRR8316903	Complete white stage	12.934
	SRR8316902	Silver flowering stage	5.600
	SRR8316904	Silver flowering stage	10.210
	SRR8316905	Silver flowering stage	4.080
	SRR8316906	Gold flowering stage	11.648
	SRR8316907	Gold flowering stage	11.844
	SRR8316908	Gold flowering stage	13.628
SRP132670	SRR6706286	Control	11.309
	SRR6706287	Light intensity 50%	13.395
	SRR6706288	Light intensity 20%	14.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.903
	CNS0095593	Slightly white alabastrum(diploid) 2	11.902
	CNS0095594	Slightly white alabastrum(diploid) 3	10.280
	CNS0095595	Whole white alabastrum(diploid) 2	9.429
	CNS0095596	Whole white alabastrum(diploid) 3	7.519
	CNS0095597	Whole white alabastrum(diploid) 4	7.873
	CNS0095598	Silvery flower (diploied) 1	18.978
	CNS0095599	Silvery flower (diploied) 2	15.878
	CNS0095600	Silvery flower (diploied) 3	11.931
	CNS0095601	Golden flower (diploid) 1	15.862
	CNS0095602	Golden flower (diploid) 2	11.836
	CNS0095603	Golden flower (diploid) 3	12.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.897
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.736
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.865
	CNS0095610	Silvery flower (tetraploid) 1	17.231
	CNS0095611	Silvery flower (tetraploid) 2	15.196
	CNS0095612	Silvery flower (tetraploid) 3	14.132
	CNS0095613	Golden flower (tetraploid) 1	9.288
	CNS0095614	Golden flower (tetraploid) 2	11.912
	CNS0095615	Golden flower (tetraploid) 3	8.192
CRA001975	CRR073297	Stem 1	10.903
	CRR073298	Stem 2	10.743
	CRR073299	Stem 3	3.853
	CRR073300	Leaf 1	12.393
	CRR073301	Leaf 2	9.757
	CRR073302	Leaf 3	4.022
	CRR073303	Juvenile bud 1	3.559
	CRR073304	Juvenile bud 2	1.603
	CRR073305	Juvenile bud 3	4.076
	CRR073306	Third green 1	0.483
	CRR073307	Third green 2	0.350
	CRR073308	Third green 3	0.541
	CRR073309	Second white 1	0.407
	CRR073310	Second white 2	1.165
	CRR073311	Second white 3	0.977
	CRR073312	Silver flowering 1	0.551
	CRR073313	Silver flowering 2	0.410
	CRR073314	Silver flowering 3	0.385
	CRR073315	Gold flowering 1	1.709
	CRR073316	Gold flowering 2	2.540
	CRR073317	Gold flowering 3	0.499
	CRR073318	Tawny withering 1	4.402
	CRR073319	Tawny withering 2	5.065
	CRR073320	Tawny withering 3	3.468