Gene detail

Detail information of GWHGAAZE022574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26917.3	6.87927E-98	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P81393\|MYB08_ANTMA	9E-66	Myb-related protein 308
trEMBL	tr\|D7T8U6\|D7T8U6_VITVI	3E-98	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26917.3}
TAIR10	AT2G16720.1	5E-52	myb domain protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74785785	74787111	-
GWHAAZE00000006	mRNA	74785785	74787111	-
GWHAAZE00000006	exon	74786964	74787111	-
GWHAAZE00000006	exon	74786669	74786802	-
GWHAAZE00000006	exon	74785785	74786220	-
GWHAAZE00000006	five_prime_UTR	74787094	74787111	-
GWHAAZE00000006	CDS	74786964	74787093	-
GWHAAZE00000006	CDS	74786669	74786802	-
GWHAAZE00000006	CDS	74785792	74786220	-
GWHAAZE00000006	three_prime_UTR	74785785	74785791	-

Transcript Sequence
>GWHTAAZE022604 TGAATCAATTAAGGAGGAATGAGGAAACCATGCTGTGAGAAGCAAGACACAAACAAAGGAGCATGGTCCAAGCAAGAAGATCAAAAGCTCACTCACTATATTCGTACTCACGGCGAAGGCTGTTGGCGCTCTCTTCCTCACTCTGCTGGCCTCCTTCGATGCGGTAAAAGTTGTAGACTGAGATGGATAAACTATCTAAGGCCGGACGTTAAAAGAGGAAACTTTGGTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCGCGCCCTCCTTGGCAGCCGGTGGTCTTTAATTGCGGGAGATTGCCAGGACGGACCGACAATGAGGTGAAGAATTATTGGAACACTCATTTGAAGAGAAAGCTTCTTAAAAAAGGTATTGATCCAAATAATCATCGCTTAATCCACTGTTTCCCTCGGCCTGAAAATCACAACTCCTCTGCTAGTGCAACTACGTCTGCTTTGAACAGCCATGCAAGCCTGACCGTTGGATCAAAAGGCGATAATGATCCTTTCTCTGATGTTCATGCTGGAAGTTATTTAGAGGAGGAAACAATTAGTCAATTGCCTGACCTAAATCTTGACCTGACAATAAAGGTTCCTTCTCCTTCAATCTGTGTTAAAGATCAAGAGGAGACTAAACATAAAGATACTACTGTGTTAAGTGAATTGGATAGTGAGACATCTTCCACACTTCTACTCTTCAGGTGATAAAAAC

Network for GWHGAAZE022574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	13	60	7.90E-13
PF00249.32	Myb_DNA-binding	66	112	3.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.213
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.578
	SRR3591709	Stem	0.471
	SRR3591710	White floral bud	3.144
	SRR3591711	White flower	1.032
	SRR3591712	Green floral bud	1.419
	SRR3591713	Yellow flower	0.330
SRP173429	SRR8316895	Juvenile bud stage	0.962
	SRR8316896	Juvenile bud stage	1.601
	SRR8316897	Juvenile bud stage	1.430
	SRR8316894	Third green stage	1.148
	SRR8316900	Third green stage	3.354
	SRR8316901	Third green stage	2.258
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.039
	SRR8316903	Complete white stage	0.617
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.172
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	0.103
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.112
SRP132670	SRR6706286	Control	2.678
	SRR6706287	Light intensity 50%	2.192
	SRR6706288	Light intensity 20%	3.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.132
	CNS0095593	Slightly white alabastrum(diploid) 2	3.320
	CNS0095594	Slightly white alabastrum(diploid) 3	8.737
	CNS0095595	Whole white alabastrum(diploid) 2	4.775
	CNS0095596	Whole white alabastrum(diploid) 3	6.292
	CNS0095597	Whole white alabastrum(diploid) 4	8.385
	CNS0095598	Silvery flower (diploied) 1	1.152
	CNS0095599	Silvery flower (diploied) 2	1.095
	CNS0095600	Silvery flower (diploied) 3	1.506
	CNS0095601	Golden flower (diploid) 1	2.840
	CNS0095602	Golden flower (diploid) 2	2.702
	CNS0095603	Golden flower (diploid) 3	0.855
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.823
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.853
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.648
	CNS0095610	Silvery flower (tetraploid) 1	0.671
	CNS0095611	Silvery flower (tetraploid) 2	1.163
	CNS0095612	Silvery flower (tetraploid) 3	0.552
	CNS0095613	Golden flower (tetraploid) 1	0.277
	CNS0095614	Golden flower (tetraploid) 2	0.594
	CNS0095615	Golden flower (tetraploid) 3	0.156
CRA001975	CRR073297	Stem 1	1.398
	CRR073298	Stem 2	1.611
	CRR073299	Stem 3	0.968
	CRR073300	Leaf 1	1.229
	CRR073301	Leaf 2	1.629
	CRR073302	Leaf 3	3.061
	CRR073303	Juvenile bud 1	0.218
	CRR073304	Juvenile bud 2	0.741
	CRR073305	Juvenile bud 3	0.116
	CRR073306	Third green 1	0.196
	CRR073307	Third green 2	0.567
	CRR073308	Third green 3	0.367
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.239
	CRR073319	Tawny withering 2	2.120
	CRR073320	Tawny withering 3	0.758