Gene detail

Detail information of GWHGAAZE022571

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631178.2	0	PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Vitis vinifera]
COG	NP_147591.2	1E-21	thermosome alpha subunit
Swissprot	tr\|Q9SSJ8\|FAB1C_ARATH	0	Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
trEMBL	tr\|F6HFI9\|F6HFI9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50838.1}
TAIR10	AT1G71010.1	0	FORMS APLOID AND BINUCLEATE CELLS 1C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74722085	74729057	+
GWHAAZE00000006	mRNA	74722085	74729057	+
GWHAAZE00000006	exon	74722085	74722770	+
GWHAAZE00000006	exon	74723056	74723186	+
GWHAAZE00000006	exon	74723302	74723800	+
GWHAAZE00000006	exon	74724093	74724246	+
GWHAAZE00000006	exon	74724330	74724674	+
GWHAAZE00000006	exon	74724792	74725400	+
GWHAAZE00000006	exon	74725487	74725818	+
GWHAAZE00000006	exon	74725937	74726063	+
GWHAAZE00000006	exon	74726174	74726338	+
GWHAAZE00000006	exon	74726433	74727830	+
GWHAAZE00000006	exon	74727925	74728191	+
GWHAAZE00000006	exon	74728803	74729057	+
GWHAAZE00000006	five_prime_UTR	74722085	74722297	+
GWHAAZE00000006	CDS	74722298	74722770	+
GWHAAZE00000006	CDS	74723056	74723186	+
GWHAAZE00000006	CDS	74723302	74723800	+
GWHAAZE00000006	CDS	74724093	74724246	+
GWHAAZE00000006	CDS	74724330	74724674	+
GWHAAZE00000006	CDS	74724792	74725400	+
GWHAAZE00000006	CDS	74725487	74725818	+
GWHAAZE00000006	CDS	74725937	74726063	+
GWHAAZE00000006	CDS	74726174	74726338	+
GWHAAZE00000006	CDS	74726433	74727830	+
GWHAAZE00000006	CDS	74727925	74728191	+
GWHAAZE00000006	CDS	74728803	74729057	+

Transcript Sequence
>GWHTAAZE022601 TACTTTTATTGTGGGTTTGTTAACTTTCACTTCTGTTAACCTGGAAGCTCTTTCTGTTTGATGCCAACCATTGGGTTCAATCCTATTAAGCCGTGAACTTTTGTTAGTTCAGTTTTATGTTTTATAGTAGGAGGAAGAAGAGCAGAAGAGTAATTTGGCGTTTGCTTTGAGGAGGAACTGGTGGTGGTTATACTTGGTGGGTTATTTTGTTCTATGGGAATACCTGATAGTTCACTATTGGATTTGATAGAGAAGGTTACATCTTGGATTTCTTGGGGAAATAGTGATCTATCTTTGTTGCCTAATTGTAAAATGGCCGATACTAGCTGCGATCTATGTCGCAAGGTGATTGTTTTGGAGTCTTACCTAAGATTCAACTGCCAGAGATGTGGTCGGATTTTCTGCGAGAATTGTATTCGGGGTTACAGTTCTTCTGGTGTGGTTCCATCAGGTGATTCGAAAAGTTTAGCCGAGGCTGGGCTTCATATTAAGTCTTGCATGTTTTGCTCTGATTTTAGTAATATGGAGATAGTTGGGAAAAAGTACAGTGATAAAATCCATCCTTCTGAGTGTACCCAGCAAAGCCCTGAACCACCATCACCGAGTTCCAATGGTGGCCAAGTTGATGGATGTTATGTTCCTGTTGGCAGCTCATCTCCGGGATCTCTTCATCCCACTCCAAGCAGGAGTGATGAAGACGAGGGAGAAGATTCAGCAAAGCACTTCTTCAGCCCATATTGTTACGATACTTCAGATATAGATTCGAGTAGTGTTAGCGATAGACACGAGTTTTACAGTCTTAAATCAGTAGGATCAAGGCCTGAAAATACTTATTATTGCAGTGACGATTTGTCTATATTCGGTGACCAACATGAGAAATTATACAAGCCATTGGATTTTGAAAACAATGGTCTCATTTGGTTTCCTCCACCTCCCGAAGTTGAAGAAGATGCAGAAAACAATTTCTTTGCATATGATGACGAGGATGATGAAATTGGGGAATCGAGTGCAATGTTTTCCTCTAGTAATAGCCTTGATAGCATGTTTACTGAGAAGGAGAAAGAGAACTCAGAGCAAAAAGAACCGTTGAGAGCTGTAGTACAAGGGCATTTTAGGGCCCTTGTTGCGCAGCTATTGCAAGGGGAGTCTATTGAGGTGGACAAAGAAAATAGCTCTGAGGACTGGCTTGATATAGTTACCAGAATATCATGGCAAGCTGCAAACTTTGTAAAACCAGATACTAGCAGAGGCGGCAGTATGGATCCCGGTGATTATGTAAAGGTTAAGTGTATAGCATCAGGAAGTCCTAGTGAAAGCAAACTTGTTAAAGGAGTAGTTTGTACAAAGAATATAAAACACAAGAGAATGACTTCACAATACAAAAACCCAAGATTACTTGTTTTGGGAGGAGCACTTGAGTATCAAAGAGTTACCAATCAGCTGGCATCTTTTGATACATTACTGCAACAGGAAATTGATCATCTGAAGATGATTGTTTCAAAGATAGAGGCCCACCGTCCGAACGTGCTGCTGGTAGAAAAAAGCGTATCTTCATATGCCCAAGAGTATCTTTTAGCAAAAGAGATCTCTTTGGTGTTGAATGTTAAGCGGTCATTGCTAGAGCGGATAGCCAGGTGTACTGGTGCTCCTATAACTCCGTCAATAGATAAAATCTCTACAACATGGTTGGGTCACTGTGAACTCTTTCGGTTAGAACGAGTTTCTGAAGAACACGAGGCCGCCAATCAGTTCAACAAGAAGCCAACTAAAACATTAATGTTTTTTGAAGGTTGTCCTAGACGTTTAGGTTGCACGGTGCTTCTCAAGGGCTCATGTCGTGAAGAACTAAAGAAGCTTAAGCATGTAATTCAGTATGCAGTTTTTGCAGCCTATCATTTATCCCTAGAGACTTCCTTCCTCGCTGATGAGGGTGCTAGTCTACCTAAAATGACATTGAAACCCTCACTAGCAATACCTGAGAGGACAATGGCCGAAAATGCCATTTCAGTAGTTGATAGTCCTAATTTTGATGCGGGACCTTCAAGCGTTAACTTTGAACTTGGAGAGCAAGAATTATTGGTTGACCACCATAATTCTTCTCTTATTCCAACAGAGTTTGGAATTACAAATGTGCCCTCAGATGTATTCGATGAAGATTTGGCAAGTCCTTTAGGTCCCATTGATATTAGAAATCATGATCAGGAGGAAGATCATGCTAAACTGACAAAGTTTGAAAGAGCTGATGGAGCTTCCACCGAATACTATTCAGCAACCGACAGTCATCAGAGCATATTAGTATCCTTTTCAAGCCGTTGCATTCTTAATGGAACTGTTTGTGAACGCTCTCGTTTGCTTCGCATCAAATTCTATGGCTGTTTTGATAAGCCGCTTGGGAGGTACCTTCGAGATGATCTATTTGATCAGACATGTTGCTGTCGATCATGTAATGAACCAGCTGAAGCCCATGTCATATGCTATACCCACCAGCAGGGGAATCTCACAATAAATGTCAAACGGATTCTGTCAGTGAAGCTACCTGGGGAACGGGATGGAAAGATATGGATGTGGCACCGTTGCCTCAGGTGTGCACATATTGATGGAGTTCCTCCAGCGACCCGTAGAGTGATCATGTCCGATGCTGCTTGGGGCCTTTCTTTCGGAAAGTTTTTGGAACTTAGTTTTTCAAACCATGCAACTGCTAATCGTGTTGCAAACTGTGGCCATTCTCTTCAAAGGGACTGCCTACGTTACTATGGCTTTGGGAGTATGGTTGCATTCTTTCGCTATTCTCCTATTGATATTCTCTCCGTACAATTGCCTCCATCGGTGCTTGAGTTCAATGGCCACTTTCAACAGAATTGGCTAAAAAAGGAGACGGCCGAGCTTTGCTTTAAAACAGAGGCCTTGTACGAGGAGATATCGGGTGTACTCCACAGCATTGAACAAAAAAATACATCTTTTGGAGGTGAAGCATCTGACACAAATGATTTACGCGACCACATTACCGAGTTCAAAGACCTCCTTATAAACGAAAGAAACAATTACAATGATTTGCTTCAGCCAGCTGGTGAAGAGTTTTCTGAATTTGGTCAACCAGCAGTTGACATTCTTGAACTAAATCACCTGAGGCACACCCTCCTTATTGGTTCACGCGTTTGGAACCGCCGGCTCTATTCATTGGAGTCTCTTCTTAAAACAAAGAATTTTAGTCCCAAGATTACGACGTCTAATACTGATCTGAAAGAGAAAACCGATTTGTTGTTCAAGGAGGGCAATTTTGACCAAGGTGATGAAGACAATTATACTGAGTGCTCTAAATTGCAATCGTCAACCTCATTCGCTTATATCAAAGAGGAGGATATAAAGCCAGGTATAGAAATTGCAGTCAACAAGTCATCCTTGGAATGTGTGCCTTCAGCTGCATCCAATCTGTCTGAGAAAATAGATTCTTTATGGACCGGTACTGATCAGTCGAAAGAACAGTTACTTCACACACTAAATGCAGAACAAATTGAAAACCCTCCTTTTAGAAGGATACTGTCTCCTACTAGAGTTTATTCTTTTGATTCTGCTGTGAGGATTCAGGAAAGAATCAAAAAAGGTTTGCCCCCTTCTTCACTGCATTTGTCAATGCGTCGGTCTTTTCATGCTTCTGGAGACTACCGGAATATGGTTAGAGATCCGATTCCCAATGTGCACAGGACTTTATCTCAAATATCGCCTCTTGAGGCTCAAAAGAGAAACCTGTTACTGAGTTCCACACCTTCATTGATCTCTTCTGCATCACTTTTGCCCGAAGGGGCGCACTTGATGGTTCAACCCAATGGCCCACATAATGTCGTGGTGGTTGTTTATGATAATGAACCCACTAGCATAATATCACATGCTCTGAGTTCAAAGGAGCACGAAGACTGGGTTGCTGATATATTATCAAATGTACCAAAGGAAATGAGCAGAGAAAATTCTGTAGGTTCTAATCTTGCAGCTTGGCAGTCTTTTGGATCTTTGGACTTGGATTACATCCACTATGGAAGCTTTGGAGGATCTCAAGATACTTCAATGACAATAGGCGGGTTGTTCACCGATCCCAAAACTCCTCATCTAAAAATTTCTTTTGAAGATGAGTCACCAAATGCTGGGGGTAAAGTGAAGTTTTCTGTAACATGTTATTTTGCGAAGCAATTTGATGCTTTTAGGAAGAAATGCTGCCCTGGTAAATTGGATTTTATACGATCTTTAAGCCGCTGCAAGAGATGGAGTGCACAAGGAGGAAAAAGCAATGTCTTTTTTGCCAAGTCTTTGGACGAAAGGTTCATTATAAAACAAGTTACAAAGACTGAGCTTGAATCTTTTGAAGAATTTGCACCCGAATACTTCAAATATTTGACGGATTCTCTTAACTCTGGAAGTCCAACTTGCCTTGCTAAAATTCTTGGTATTTACCAGGTAACTGTGAAGCACTTGAAGGGTGGCAAAGAAACTAAAATGGATTTGATGGTTATGGAGAATCTCTTTTACAAAAGAAGTATCTCAAGGGTGTATGATCTTAAGGGCTCTGCACGGTCACGTTATAATTCAGATACAACTGGGGTAAACAAAGTGTTGCTTGATATGAACCTCTTAGAAGCACTTCGTGCAAATCCCATATTTCTTGGAAGCAAGGCTAAGAGGAGCCTAGAAAGAGCTGTTTGGAATGATACATCGTTTTTAGCTTCTGTAGATGTGATGGACTACTCTTTGTTGGTTGGAGTGGATGATGAGAGGAAGGAGCTGGTATTGGGGATTATTGATTTTATGAGACAATATACGTGGGACAAGCATCTGGAGACTTGGGTGAAGGCGTCTGGTATTCTTGGGGGTCCGAAGAATGCTTCTCCAACCATTATTTCTCCCAAACAATACAAGAGAAGATTTCGAAAAGCAATGACCACCTATTTTCTTACCGTACCAGATCAGTGGTCACCATGA

Network for GWHGAAZE022571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	321	564	1.10E-33
PF01504.19	PIP5K	1351	1517	2.50E-35

Protein Sequence

>GWHPAAZE022587
MGIPDSSLLDLIEKVTSWISWGNSDLSLLPNCKMADTSCDLCRKVIVLESYLRFNCQRCGRIFCENCIRGYSSSGVVPSGDSKSLAEAGLHIKSCMFCSDFSNMEIVGKKYSDKIHPSECTQQSPEPPSPSSNGGQVDGCYVPVGSSSPGSLHPTPSRSDEDEGEDSAKHFFSPYCYDTSDIDSSSVSDRHEFYSLKSVGSRPENTYYCSDDLSIFGDQHEKLYKPLDFENNGLIWFPPPPEVEEDAENNFFAYDDEDDEIGESSAMFSSSNSLDSMFTEKEKENSEQKEPLRAVVQGHFRALVAQLLQGESIEVDKENSSEDWLDIVTRISWQAANFVKPDTSRGGSMDPGDYVKVKCIASGSPSESKLVKGVVCTKNIKHKRMTSQYKNPRLLVLGGALEYQRVTNQLASFDTLLQQEIDHLKMIVSKIEAHRPNVLLVEKSVSSYAQEYLLAKEISLVLNVKRSLLERIARCTGAPITPSIDKISTTWLGHCELFRLERVSEEHEAANQFNKKPTKTLMFFEGCPRRLGCTVLLKGSCREELKKLKHVIQYAVFAAYHLSLETSFLADEGASLPKMTLKPSLAIPERTMAENAISVVDSPNFDAGPSSVNFELGEQELLVDHHNSSLIPTEFGITNVPSDVFDEDLASPLGPIDIRNHDQEEDHAKLTKFERADGASTEYYSATDSHQSILVSFSSRCILNGTVCERSRLLRIKFYGCFDKPLGRYLRDDLFDQTCCCRSCNEPAEAHVICYTHQQGNLTINVKRILSVKLPGERDGKIWMWHRCLRCAHIDGVPPATRRVIMSDAAWGLSFGKFLELSFSNHATANRVANCGHSLQRDCLRYYGFGSMVAFFRYSPIDILSVQLPPSVLEFNGHFQQNWLKKETAELCFKTEALYEEISGVLHSIEQKNTSFGGEASDTNDLRDHITEFKDLLINERNNYNDLLQPAGEEFSEFGQPAVDILELNHLRHTLLIGSRVWNRRLYSLESLLKTKNFSPKITTSNTDLKEKTDLLFKEGNFDQGDEDNYTECSKLQSSTSFAYIKEEDIKPGIEIAVNKSSLECVPSAASNLSEKIDSLWTGTDQSKEQLLHTLNAEQIENPPFRRILSPTRVYSFDSAVRIQERIKKGLPPSSLHLSMRRSFHASGDYRNMVRDPIPNVHRTLSQISPLEAQKRNLLLSSTPSLISSASLLPEGAHLMVQPNGPHNVVVVVYDNEPTSIISHALSSKEHEDWVADILSNVPKEMSRENSVGSNLAAWQSFGSLDLDYIHYGSFGGSQDTSMTIGGLFTDPKTPHLKISFEDESPNAGGKVKFSVTCYFAKQFDAFRKKCCPGKLDFIRSLSRCKRWSAQGGKSNVFFAKSLDERFIIKQVTKTELESFEEFAPEYFKYLTDSLNSGSPTCLAKILGIYQVTVKHLKGGKETKMDLMVMENLFYKRSISRVYDLKGSARSRYNSDTTGVNKVLLDMNLLEALRANPIFLGSKAKRSLERAVWNDTSFLASVDVMDYSLLVGVDDERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKRRFRKAMTTYFLTVPDQWSP

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.741
	SRR3591706	second leaf	6.997
	SRR3591707	mature leaf	6.063
	SRR3591708	Shoot apex	14.667
	SRR3591709	Stem	30.082
	SRR3591710	White floral bud	7.830
	SRR3591711	White flower	12.786
	SRR3591712	Green floral bud	8.048
	SRR3591713	Yellow flower	5.364
SRP173429	SRR8316895	Juvenile bud stage	4.894
	SRR8316896	Juvenile bud stage	4.308
	SRR8316897	Juvenile bud stage	3.522
	SRR8316894	Third green stage	2.940
	SRR8316900	Third green stage	6.210
	SRR8316901	Third green stage	5.626
	SRR8316898	Complete white stage	0.815
	SRR8316899	Complete white stage	8.557
	SRR8316903	Complete white stage	2.922
	SRR8316902	Silver flowering stage	0.978
	SRR8316904	Silver flowering stage	2.038
	SRR8316905	Silver flowering stage	0.933
	SRR8316906	Gold flowering stage	2.746
	SRR8316907	Gold flowering stage	2.513
	SRR8316908	Gold flowering stage	3.384
SRP132670	SRR6706286	Control	3.616
	SRR6706287	Light intensity 50%	4.704
	SRR6706288	Light intensity 20%	4.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.492
	CNS0095593	Slightly white alabastrum(diploid) 2	4.658
	CNS0095594	Slightly white alabastrum(diploid) 3	3.320
	CNS0095595	Whole white alabastrum(diploid) 2	3.319
	CNS0095596	Whole white alabastrum(diploid) 3	1.769
	CNS0095597	Whole white alabastrum(diploid) 4	3.393
	CNS0095598	Silvery flower (diploied) 1	8.316
	CNS0095599	Silvery flower (diploied) 2	5.114
	CNS0095600	Silvery flower (diploied) 3	5.399
	CNS0095601	Golden flower (diploid) 1	5.076
	CNS0095602	Golden flower (diploid) 2	9.215
	CNS0095603	Golden flower (diploid) 3	9.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.618
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.991
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.462
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.942
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.969
	CNS0095610	Silvery flower (tetraploid) 1	4.242
	CNS0095611	Silvery flower (tetraploid) 2	4.667
	CNS0095612	Silvery flower (tetraploid) 3	3.700
	CNS0095613	Golden flower (tetraploid) 1	1.559
	CNS0095614	Golden flower (tetraploid) 2	3.115
	CNS0095615	Golden flower (tetraploid) 3	2.318
CRA001975	CRR073297	Stem 1	7.019
	CRR073298	Stem 2	6.259
	CRR073299	Stem 3	4.422
	CRR073300	Leaf 1	7.271
	CRR073301	Leaf 2	5.236
	CRR073302	Leaf 3	3.674
	CRR073303	Juvenile bud 1	2.884
	CRR073304	Juvenile bud 2	2.337
	CRR073305	Juvenile bud 3	5.709
	CRR073306	Third green 1	0.224
	CRR073307	Third green 2	0.112
	CRR073308	Third green 3	0.230
	CRR073309	Second white 1	0.446
	CRR073310	Second white 2	0.510
	CRR073311	Second white 3	0.336
	CRR073312	Silver flowering 1	0.850
	CRR073313	Silver flowering 2	0.512
	CRR073314	Silver flowering 3	0.465
	CRR073315	Gold flowering 1	1.791
	CRR073316	Gold flowering 2	6.198
	CRR073317	Gold flowering 3	1.406
	CRR073318	Tawny withering 1	7.679
	CRR073319	Tawny withering 2	7.514
	CRR073320	Tawny withering 3	7.054