Gene detail

Detail information of GWHGAAZE022529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00832.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TXP8\|A0A068TXP8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00832.1}
TAIR10	AT2G01650.1	9E-139	plant UBX domain-containing protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74008477	74013234	+
GWHAAZE00000006	mRNA	74008477	74013234	+
GWHAAZE00000006	exon	74008477	74009361	+
GWHAAZE00000006	exon	74010390	74010668	+
GWHAAZE00000006	exon	74012886	74013234	+
GWHAAZE00000006	CDS	74008477	74009361	+
GWHAAZE00000006	CDS	74010390	74010668	+
GWHAAZE00000006	CDS	74012886	74013122	+
GWHAAZE00000006	three_prime_UTR	74013123	74013234	+

Transcript Sequence
>GWHTAAZE022559 ATGGGTGATATGAAGGATAAAATGAAGGGATTCATAAAGAAAGTAAACAATCCTTTCACATCTTCTTCTTCTGGTAAATTCAAGGGTCAAGGCCGAGTTCTTGGTTCTTCCTCAGGACCCACCAATTCAATTCCCACCCGCCAATTGCCCACTCCTAATCCATACCCTAACCGACAACCCGCAAATTCCGTAAACTCCAAACCCTCGCCCCAAAAATCAGATACCTCTGATAATCAACAACTTCAGAATAGACCAGATGTTTCGGTCCCAACCGCAAAATCAGCAAATGGGTTTGATCCATTCGACTCATTGATCACTACGGGCAAAAGAAACAAAAATGGCTATTCACTGGAGGTATATGAGTGCCCTGTATGTGGCCGCGGATACCGGTCCGAAGAAGAGGTAACTGCTCATGTTGATACTTGCCTTACTACTTCTGAACCAAATAATGTTGTTGCTGTATCAGAATTGGGGGCCGGGGAAAGTAATAATGTTGATTCTCGAAGCGAATTAGAGGTGTTTGTGGGTGGATATCTATCTGGGAAGCCTTCAGATGGGTCTCTTGAAATTTTTTTGAAGCTTCTGAGGAATATAGTTAGAGAACCTGAGAATGTCAAGTTTAGGAAGATTCGGATGGGGAATCCAAAGATAAAGGAGGCCATAGCTGATATTGCTGGAGGTGTGGAGTTGTTGGAGTTTATTGGGTTTGGATTACAAGAGGAAGGTGGGGAGTTGTGGGCAGTGATGGAAGCTCCTTCCAATGAGCAAATTGGGCTAATTAAGAAAGCAATATATTTCTTGGAACCAAGAAAGGTTGACGATTTGCCATCTAAAGAACCAGTTAAGGTAGAGGAACCCGTTGAGCTGAAGGAAATCGATAGACAGATACGGGTGTTCTTTTCTGTCCCTGAAAGTGTAGCAGCAAAAATAGAGCTTCCAGAATCTTTTTATAATCTCTCGCTCGAAGAAGTGAAAAGAGATGCAAACACGAGGAGAAAAAAACTTGAAGAGTCCCAGCTTTTGGTACCTAAATCATTGAAGGAAAAGCAAGCAAGAGCTGCAAAGAAGAGGTACACAAAAACTGTTATTAGGGTACAGTTTCCTGATGGAGTGGTGCTCCAAGGTGTCTTTTCTCCTCGGGAACCTACTACTGCTATCTACGAGTTTGTGAGCTCGGCATTGAAAGAACAAAGCTTGGAGTATGAGCTTTTGAATCCTGTTAATATAAAAAGGCGGGTGATCCCACATTTTCCAGCAGCAGCAGGAGAGAAACCCAGAACACTAGAGGATGAGGATTTGGTACCTGCAGCTCTTATCAAATTCAAACCTTTCGAGACCGATGCCGTCGTTTTCACCGGACTCTCTAATGAATTCCTTCAACTCATGGAACCACTTGTATAAGGTCCAATCCGCTCCACTTGCCTCCATCATTTGGAGGGATTTTTTTATTGGTAAATAAAACAGAGATTGCTTATGGGGTGTTTTGATCGATATTTGCATTTAGTACTCAAGA

Network for GWHGAAZE022529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09409.11	PUB	187	259	7.90E-17
PF00789.21	UBX	356	407	7.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
K14011	UBXN6, UBXD1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.649
	SRR3591706	second leaf	11.293
	SRR3591707	mature leaf	7.945
	SRR3591708	Shoot apex	18.726
	SRR3591709	Stem	57.118
	SRR3591710	White floral bud	39.484
	SRR3591711	White flower	58.041
	SRR3591712	Green floral bud	36.900
	SRR3591713	Yellow flower	36.764
SRP173429	SRR8316895	Juvenile bud stage	59.456
	SRR8316896	Juvenile bud stage	66.613
	SRR8316897	Juvenile bud stage	59.032
	SRR8316894	Third green stage	12.091
	SRR8316900	Third green stage	33.062
	SRR8316901	Third green stage	47.579
	SRR8316898	Complete white stage	12.202
	SRR8316899	Complete white stage	70.584
	SRR8316903	Complete white stage	18.867
	SRR8316902	Silver flowering stage	14.808
	SRR8316904	Silver flowering stage	22.081
	SRR8316905	Silver flowering stage	10.799
	SRR8316906	Gold flowering stage	35.218
	SRR8316907	Gold flowering stage	34.434
	SRR8316908	Gold flowering stage	38.347
SRP132670	SRR6706286	Control	20.219
	SRR6706287	Light intensity 50%	20.261
	SRR6706288	Light intensity 20%	18.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.309
	CNS0095593	Slightly white alabastrum(diploid) 2	45.085
	CNS0095594	Slightly white alabastrum(diploid) 3	48.045
	CNS0095595	Whole white alabastrum(diploid) 2	55.755
	CNS0095596	Whole white alabastrum(diploid) 3	21.149
	CNS0095597	Whole white alabastrum(diploid) 4	38.926
	CNS0095598	Silvery flower (diploied) 1	128.717
	CNS0095599	Silvery flower (diploied) 2	111.494
	CNS0095600	Silvery flower (diploied) 3	67.357
	CNS0095601	Golden flower (diploid) 1	99.500
	CNS0095602	Golden flower (diploid) 2	107.323
	CNS0095603	Golden flower (diploid) 3	107.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.822
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.512
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.815
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.542
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.524
	CNS0095610	Silvery flower (tetraploid) 1	35.630
	CNS0095611	Silvery flower (tetraploid) 2	28.421
	CNS0095612	Silvery flower (tetraploid) 3	35.330
	CNS0095613	Golden flower (tetraploid) 1	25.130
	CNS0095614	Golden flower (tetraploid) 2	36.800
	CNS0095615	Golden flower (tetraploid) 3	44.347
CRA001975	CRR073297	Stem 1	27.902
	CRR073298	Stem 2	26.766
	CRR073299	Stem 3	26.723
	CRR073300	Leaf 1	28.699
	CRR073301	Leaf 2	35.449
	CRR073302	Leaf 3	19.753
	CRR073303	Juvenile bud 1	22.010
	CRR073304	Juvenile bud 2	28.201
	CRR073305	Juvenile bud 3	35.129
	CRR073306	Third green 1	24.123
	CRR073307	Third green 2	26.789
	CRR073308	Third green 3	26.206
	CRR073309	Second white 1	33.308
	CRR073310	Second white 2	36.904
	CRR073311	Second white 3	40.844
	CRR073312	Silver flowering 1	76.325
	CRR073313	Silver flowering 2	66.502
	CRR073314	Silver flowering 3	66.494
	CRR073315	Gold flowering 1	18.695
	CRR073316	Gold flowering 2	33.839
	CRR073317	Gold flowering 3	27.486
	CRR073318	Tawny withering 1	36.190
	CRR073319	Tawny withering 2	57.678
	CRR073320	Tawny withering 3	52.998