Gene detail

Detail information of GWHGAAZE022526

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00835.1	0	unnamed protein product [Coffea canephora]
COG	YP_004579826.1	2E-21	hypothetical protein
Swissprot	tr\|Q9LP77\|Y1848_ARATH	1E-175	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|M0ZV54\|M0ZV54_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400008826}
TAIR10	AT3G17840.1	3E-121	receptor-like kinase 902

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73992697	73996745	+
GWHAAZE00000006	mRNA	73992697	73996745	+
GWHAAZE00000006	exon	73992697	73993966	+
GWHAAZE00000006	exon	73994261	73994825	+
GWHAAZE00000006	exon	73995872	73996745	+
GWHAAZE00000006	CDS	73992697	73993966	+
GWHAAZE00000006	CDS	73994261	73994825	+
GWHAAZE00000006	CDS	73995872	73996745	+

Transcript Sequence
>GWHTAAZE022556 ATGGTCTCTCACCTCCTCCTCCTTTTTCCCCTCTTACTTTCTTTCCTCCCCGCCGGCACCTCTGACGATAGAACCGCCCTCCTCCTCCTCAGCGCCGCCGTCCGGGGCTCCACCCTCCGCTGGAACCGCTCCTTCCCAACCCCATGTTCATGGGAAGGCGTCACCTGCAACAACACAACCAACCGCGTCACCTCCCTCCGTCTCCCCGCCGACGGTCTCTCCGGCCAACTGCCCCCTAACTCCATTGGAAACCTTACCCACCTCCGCTCCCTCAGCCTCCGCCATAACTCTCTGTCTGGCCCACTCCCCTCCGACTTGTCTTCATGCACAGACCTAACCACCCTCGTCTTGAAAGACAACCAATTCTCCGGCCAAATTCCGGCCACTCTTTTCTCCTTAAACAACCTTGTCCGTATTGACCTCTCCGGCAACAACTTCTCCGGCCAGATATTGCCAGAGTTCAACAACCTCACGGAGTTGAAAACTCTGCACTTGGAGAACAACCAATTCGTTGGGTCAGTCCCCGAATTGAATGGTCTATTAGAACTTACAGAATTCAATGTTTCGTTTAATAGATTAACCGGCACAATTCCATCTAGTCTCGCAAGATTTTCACCTATGTCATTTGTGGGTAATTCCCTTTCTTCTTTGCCCGTTAGTCCTAATGAAGACGGAAATAAACTTTCAGGCGGAGCTATAGCCGGAATTGCAATCGGTTCAGTTATTGCTCTGCTTCTGATACTTTCAGTATGCTTCATTCTATGGAAAAGGCACACTATTGCAAGAACTACACGGCGGGTCAAAATGACACCGGTACCCCGGTCACCAGTAAAACCACCGCAATTTGAATCTTGGGATCCTGTTATAGTAAGTGAAAGAGACATTAATTTATCAAGTAATGATTTTCCAGTGAGGCCGAGGGTGGTGAAAGTAATAAAGAGTAGTGGAAATGAGGGGTTGGTGTTTTTTGGGGATGGTGGTGTTGGGGATTTTAGTTTAGAGGACTTGTTGAAGGCTTCAGCAGAGGTATTGGGGAAGGGGACTTGTGGGACTACATATAAAGCATATTTGCAGGGTGGGAGTGAAGCGATTGTGAAGAGGTTGAGAAATGTGTGTGTTTCTGAGAGAGAATTTAGAGAGAGAATTGAGGGAATGGGATTGGTGGTTCATGATAATTTGGTTCCTCTTATAGCATATTTTTATAACAAGGATGAACAGCTTCTTGTCCATGGTTCCATGCCAATGGGTAGCCTTTTTTCACTTTTACATGGAACCGGAGGCACTCACCGATCATCATTGACGTGGGACTTGAGGAGTAAAATTGCATTAGAGGCTGCCCTTGGTATCGAGTATCTCCACTACTTTGTCCCTAATCTCACCCATGGCAACATTAAATCATCAAACGTTCTCCTCACTGACCAAAACTGTGCATGCATCTCCGAATTCGGCATTACACAACTTCTTTCCTCCTCCATTCCCGAACTGAATGGCTATCGTGCACCGGAGGTAGTGGACACCCGTAAGATATCCCAAGAGGCCGATGTCTATAGTTTTGGCATTCTTCTTTTGGAACTGTTGACCGGTAAGGAGCCTACAAATGCACTAGAAGAGGAGGGGGTGGACTTAGCTAGGTGGGTTCAGTCAGTGGTTGAAGAGAAATGGACCATTGATGTGTTTGATAGTGAACTTCTTAGGTACCAGAATATGGAGGAGCAAATGGTTCAGCTATTGCATCTTGCTATTTCTTGTACTTCTCAGTACCCTGAGAGGCGACCACCGATGATGAAGGTGACCAGACAGATAAAGAGAATTTGTGGACTCTCCACGTCTCTCGTATCCGGGATTCTACTTCCCATTCTATTTCCATTACAACTTCACTCTGTTTTTCCTAGCCACACAAATGCTTGTTTTACGCCTCTACTGTTTCTCATCCCGGTATCGTCGCCGACTATTTCTCCGATTCGCGACTCGGTAGCTTCCTTGCTTCTTCGCCCCTTCATCAACAACAACCGTCAAAATCTTTCAAAGCTCCATAATCGGTCCTCGTTTCCTCCACTTCGCGGTTATCCAGCGGTACCGGATCCATACTCCTCACTGGGTCTCGTATCCCCCTCCCCATTCTCGCTTTCTCTAGAAACACAAACAAACATTGCGGTACGGTGTCCGATTACAACAACCAGCGCAGCGATCTCGAATCCTCCGCCCCTTTCGCGCCAGATCCGAACCTCTTCACCCACATCCGGACATAGACATATTGTTGCGTTGAATTTAATTTTCCGCAAAACAAAACAAAAACTCTTGCCAGCCTCATGGAACTTCATCTCGCCTCACATCACCCACTTTACTTGTGGCCTCTCTTGTTCGACTCAACCCTCATTCATCACCTGGATCACCCTCAACCCCACCGGATACTCCGGCACCCTCTCCCACTCATCTCCGGCCTCACCCAACTCTCCGACCTCGACCGAGAGCAAGTTTTCACAGATCACCACCACTGCCGCCTCTCGGGCCCGGCAGTTTACGATTCTCCTGCACCTCCATCGTCCTCATCTCCGCCTCCTGTTCTCGACTTCCCCGCCGATCGAGTCCGTCTCCTCAGGGGCGGTCGGATCCTCTCCAGCCCGCCTTAGGGCTTCAAATAGTACTCCGTCGAGCTCATCGCCTTCTTTCGCTTTGGACTTGTGGTTGGAGTTCTTGGTGATGTTGTGA

Network for GWHGAAZE022526

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	21	57	9.10E-07
PF00069.26	Pkinase	342	598	2.00E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.478
	SRR3591706	second leaf	2.248
	SRR3591707	mature leaf	5.411
	SRR3591708	Shoot apex	0.681
	SRR3591709	Stem	3.820
	SRR3591710	White floral bud	1.735
	SRR3591711	White flower	3.750
	SRR3591712	Green floral bud	0.943
	SRR3591713	Yellow flower	4.410
SRP173429	SRR8316895	Juvenile bud stage	0.875
	SRR8316896	Juvenile bud stage	0.904
	SRR8316897	Juvenile bud stage	0.313
	SRR8316894	Third green stage	0.423
	SRR8316900	Third green stage	0.679
	SRR8316901	Third green stage	0.574
	SRR8316898	Complete white stage	0.270
	SRR8316899	Complete white stage	3.202
	SRR8316903	Complete white stage	0.992
	SRR8316902	Silver flowering stage	0.899
	SRR8316904	Silver flowering stage	1.520
	SRR8316905	Silver flowering stage	0.885
	SRR8316906	Gold flowering stage	4.075
	SRR8316907	Gold flowering stage	5.177
	SRR8316908	Gold flowering stage	6.202
SRP132670	SRR6706286	Control	2.572
	SRR6706287	Light intensity 50%	2.175
	SRR6706288	Light intensity 20%	1.592
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.577
	CNS0095593	Slightly white alabastrum(diploid) 2	1.813
	CNS0095594	Slightly white alabastrum(diploid) 3	1.454
	CNS0095595	Whole white alabastrum(diploid) 2	1.166
	CNS0095596	Whole white alabastrum(diploid) 3	0.243
	CNS0095597	Whole white alabastrum(diploid) 4	1.257
	CNS0095598	Silvery flower (diploied) 1	6.190
	CNS0095599	Silvery flower (diploied) 2	2.273
	CNS0095600	Silvery flower (diploied) 3	2.353
	CNS0095601	Golden flower (diploid) 1	2.696
	CNS0095602	Golden flower (diploid) 2	4.309
	CNS0095603	Golden flower (diploid) 3	4.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.248
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.688
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.096
	CNS0095610	Silvery flower (tetraploid) 1	1.738
	CNS0095611	Silvery flower (tetraploid) 2	1.543
	CNS0095612	Silvery flower (tetraploid) 3	5.343
	CNS0095613	Golden flower (tetraploid) 1	1.715
	CNS0095614	Golden flower (tetraploid) 2	1.551
	CNS0095615	Golden flower (tetraploid) 3	1.699
CRA001975	CRR073297	Stem 1	1.486
	CRR073298	Stem 2	1.359
	CRR073299	Stem 3	0.899
	CRR073300	Leaf 1	1.441
	CRR073301	Leaf 2	1.479
	CRR073302	Leaf 3	0.788
	CRR073303	Juvenile bud 1	1.394
	CRR073304	Juvenile bud 2	0.272
	CRR073305	Juvenile bud 3	2.831
	CRR073306	Third green 1	0.805
	CRR073307	Third green 2	1.373
	CRR073308	Third green 3	1.939
	CRR073309	Second white 1	7.093
	CRR073310	Second white 2	5.530
	CRR073311	Second white 3	6.483
	CRR073312	Silver flowering 1	10.682
	CRR073313	Silver flowering 2	13.334
	CRR073314	Silver flowering 3	10.634
	CRR073315	Gold flowering 1	6.189
	CRR073316	Gold flowering 2	11.012
	CRR073317	Gold flowering 3	10.985
	CRR073318	Tawny withering 1	6.560
	CRR073319	Tawny withering 2	8.848
	CRR073320	Tawny withering 3	4.382