Gene detail

Detail information of GWHGAAZE022488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006494664.1	0	PREDICTED: probable receptor protein kinase TMK1-like isoform X1 [Citrus sinensis]
COG	YP_004775215.1	2E-21	RHS repeat-associated core domain-containing protein
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|A0A067DPV2\|A0A067DPV2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO41052.1}
TAIR10	AT1G66150.1	1E-142	transmembrane kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73331478	73335443	+
GWHAAZE00000006	mRNA	73331478	73335443	+
GWHAAZE00000006	exon	73331478	73333011	+
GWHAAZE00000006	exon	73334899	73335443	+
GWHAAZE00000006	CDS	73331478	73333011	+
GWHAAZE00000006	CDS	73334899	73335443	+

Transcript Sequence
>GWHTAAZE022518 ATGGGTTCTACCTTAACTCTGTTCTCTTTATCACTACTCTCTCTTTTCATTTCCGTTCACTCTCTCTCAACTTCATCAGATTCTTCAGTAATGCAAGATTTGAAAAAATCCATCAACCCACCTTCTTCACTTGGCTGGACCGACCCAGACCCCTGTAACTGGAACCACGTTCAATGCTCCGAAGAAAAACGGGTCACCCGGATCCAAATCGGGCATCAGGGTCTCAAAGGCTCTCTCCCTTCCAACCTCAACACCCTCACTTCCTTGCAGGTATTTGAGGTTCAGTACAATGAACTCACCGGGTCAGTCTCGGGTCTCTCCGGGATCAGTTCCATCGAAACAATTACACTCACCAACAACAATTTCTCATCCATACCCACGGATTTTTTCAATGGCATGTCTTCTTTACAAGATGTTTATCTTGACTACAATCCATTTTCATCTTGGTCTATACCTGATAGTCTTCGTAGCGTGTCGAATCTTCGAACTTTCTCGGCTACATCTGCTAACATGGCTGGGAAAATCCCTGATTTTTTCGGAAGTGGCAGTTTCTCCGGATTGATCAATTTGCGTTTAGCGTTTAATTTTCTGGAGGGTGGATTACCCCCGAGTTTCTCAGGTTCTTCTATTCAGTCTTTGTGGTTGAATGGGCAGCGGAGTGAACCTAAGCTAAGTGGTCCCATTGATGTTTTACAGAACATGACAGAGTTGCATGAAGTTTGGTTGCACTCTAATTCATTTTCAGGTCCTTTACCGGACTTGTCTGGGTTGAAAGAATTGCAGAACTTGAGTTTAAGGGACAATAGCTTTACGGGTCCGATACCAGTGTCTTTTGTAAATCTTCCTTTGCTTAAGATTGTGAATTTAACTAATAATTTGCTACAGGGGCTGAGCCCGGTGTTTAAATCTTCCGTTGCAGTGGATATGATTGACGGAACTAACAGTTTTTGTTTATCAAATCCTGGTAAAGCCTGTGATCCCCGTGTGAATGCATTGCTTGCTATTGCGCAGTCTGTGGGTAACCCGAAGGCTTTCGGGGAGAAATGGAAAGGGAATGATCCTTGCGCTGATTGGTTAGGGATCACTTGTTCCAGTGGTAACATTAGTGTCGTTAATTTTCAAAAAATGGGTCTAACAGGTGTGATCTCCCCCAATTTTTCATCCATTACGTCACTGCAGAGATTGGTTCTTTCTAATAACAATCTTACCGGTTCTATTCCAAATGAGCTTACAAGTTTACCCAACCTTAGAGAAGTAGATGTTTCAAACAATCTGCTTTATGGTAAAATCCCTTCATTTCGGCCTAATGTGATTGTAAAAACTGCTGGCAATGTCGATATGGGGAAGGATAAGGGTCCCATTCCAACACCCATAAAACCTGGATCACCCTTGGGTGAGGGTACCGATACTCCTAAAGATGGTAATGGTAACAACATATATGCAATTGGAAAGATTGTGCTTGTGGTGGTTGTTGGGGTATGTGCAGTTTTCTTAGTTGGTTTACTAGTTTTCTGTGTTTGTAAAAAAGCTACAATGACAGGGAGGATAACAAAGAAGGTGGACGTGTATAGCTTTGGGGTGATCTTAATGGAGCTGATAACCGGAAGAAAAGCAATAGATGCACACCAACAAGAGGATGGTGTGCACCTTGTTCCATGGTTCCAGAAAATGCGCACCACCAAGGAGTTATTCGCGAAGGCAATAGACCCGACACTCGATAATCTTAATGATGAGGAAACCTATGCTAGTATCGCAAAAATTGCTGAGCTGGCTGGCCACTGCTGCTCAAGGGATCCCAACCAGAGGCCCGACATGGCTTACGTGGTTAATAAACTGTCCTCGCAAGCCGACCGCTGGGAACCGTCGGATCCTGATTCAGATGAATTTGATAAAAATGATCCTTACAAGGCGTTTCTGCAGGCGGTCGAGCAGTGGAAGCCTCGCAACGGAACCAACAGCTCTGATGGTTCTTTTTGGTCTTCCACTGACCAGAGGCAAACCAGCATATCTGCTCCATCTTCTGGTCTGTCGGATTCATCATCTATGTACCCAGATGCCTCGTATGTAATAAGGAAATAA

Network for GWHGAAZE022488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	60	1.10E-05
PF08263.13	LRRNT_2	329	364	0.0002
PF12799.8	LRR_4	390	432	5.30E-08
PF07714.18	PK_Tyr_Ser-Thr	512	612	2.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.181
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.065
	SRR3591708	Shoot apex	0.110
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.095
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.108
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.582
	SRR8316896	Juvenile bud stage	5.093
	SRR8316897	Juvenile bud stage	0.389
	SRR8316894	Third green stage	0.274
	SRR8316900	Third green stage	0.292
	SRR8316901	Third green stage	0.372
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.077
	SRR8316903	Complete white stage	0.049
	SRR8316902	Silver flowering stage	0.057
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.267
	SRR6706287	Light intensity 50%	0.181
	SRR6706288	Light intensity 20%	0.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.304
	CNS0095593	Slightly white alabastrum(diploid) 2	0.185
	CNS0095594	Slightly white alabastrum(diploid) 3	0.810
	CNS0095595	Whole white alabastrum(diploid) 2	0.104
	CNS0095596	Whole white alabastrum(diploid) 3	0.279
	CNS0095597	Whole white alabastrum(diploid) 4	0.310
	CNS0095598	Silvery flower (diploied) 1	0.055
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.018
	CNS0095601	Golden flower (diploid) 1	0.082
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.144
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.175
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.024
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.880
	CRR073298	Stem 2	1.358
	CRR073299	Stem 3	2.461
	CRR073300	Leaf 1	0.244
	CRR073301	Leaf 2	0.307
	CRR073302	Leaf 3	0.302
	CRR073303	Juvenile bud 1	0.258
	CRR073304	Juvenile bud 2	0.186
	CRR073305	Juvenile bud 3	0.156
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.014
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.186
	CRR073317	Gold flowering 3	0.002
	CRR073318	Tawny withering 1	0.037
	CRR073319	Tawny withering 2	0.127
	CRR073320	Tawny withering 3	0.154