Detail information of GWHGAAZE022469


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001268137.13.1737E-137GAGA-binding transcriptional activator BBR/BPC1-like [Vitis vinifera]
Swissprottr|Q9SKD0|BPC1_ARATH2E-100Protein BASIC PENTACYSTEINE1
trEMBLtr|B2Z454|B2Z454_VITVI1E-137GAGA-binding transcriptional activator BBR/BPC1-like {ECO:0000313|EMBL:ACC64525.1}
TAIR10AT2G01930.29E-76basic pentacysteine1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7309388373094734+
GWHAAZE00000006mRNA7309388373094734+
GWHAAZE00000006exon7309388373094058+
GWHAAZE00000006exon7309408973094734+
GWHAAZE00000006CDS7309388373094058+
GWHAAZE00000006CDS7309408973094734+
Transcript Sequence

Network for GWHGAAZE022469

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06217.13GAGA_bind12732.30E-105
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyBBR-BPC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.234
SRR3591706second leaf23.722
SRR3591707mature leaf16.043
SRR3591708Shoot apex39.505
SRR3591709Stem37.489
SRR3591710White floral bud20.577
SRR3591711White flower28.359
SRR3591712Green floral bud28.129
SRR3591713Yellow flower22.411
SRP173429 SRR8316895Juvenile bud stage 11.957
SRR8316896Juvenile bud stage 17.810
SRR8316897Juvenile bud stage 9.394
SRR8316894Third green stage 9.847
SRR8316900Third green stage 26.008
SRR8316901Third green stage 24.793
SRR8316898Complete white stage 10.980
SRR8316899Complete white stage 42.653
SRR8316903Complete white stage 17.302
SRR8316902Silver flowering stage7.261
SRR8316904Silver flowering stage9.200
SRR8316905Silver flowering stage5.089
SRR8316906Gold flowering stage 18.182
SRR8316907Gold flowering stage 17.011
SRR8316908Gold flowering stage 21.854
SRP132670SRR6706286Control23.903
SRR6706287Light intensity 50%22.938
SRR6706288Light intensity 20%24.547
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.280
CNS0095593Slightly white alabastrum(diploid) 223.807
CNS0095594Slightly white alabastrum(diploid) 319.635
CNS0095595Whole white alabastrum(diploid) 222.206
CNS0095596Whole white alabastrum(diploid) 318.535
CNS0095597Whole white alabastrum(diploid) 422.992
CNS0095598Silvery flower (diploied) 115.244
CNS0095599Silvery flower (diploied) 210.352
CNS0095600Silvery flower (diploied) 315.753
CNS0095601Golden flower (diploid) 113.562
CNS0095602Golden flower (diploid) 217.564
CNS0095603Golden flower (diploid) 322.409
CNS0095604Slightly white alabastrum(tetraploid) 126.132
CNS0095605Slightly white alabastrum(tetraploid) 220.846
CNS0095606Slightly white alabastrum(tetraploid) 333.044
CNS0095607Whole white alabastrum(tetraploid) 117.208
CNS0095608Whole white alabastrum(tetraploid) 217.958
CNS0095609Whole white alabastrum(tetraploid) 323.281
CNS0095610Silvery flower (tetraploid) 118.036
CNS0095611Silvery flower (tetraploid) 217.077
CNS0095612Silvery flower (tetraploid) 320.115
CNS0095613Golden flower (tetraploid) 115.410
CNS0095614Golden flower (tetraploid) 217.248
CNS0095615Golden flower (tetraploid) 319.066
CRA001975CRR073297Stem 137.135
CRR073298Stem 242.149
CRR073299Stem 345.034
CRR073300Leaf 149.246
CRR073301Leaf 249.414
CRR073302Leaf 337.475
CRR073303Juvenile bud 141.254
CRR073304Juvenile bud 231.826
CRR073305Juvenile bud 351.959
CRR073306Third green 121.509
CRR073307Third green 223.060
CRR073308Third green 321.407
CRR073309Second white 122.638
CRR073310Second white 219.160
CRR073311Second white 314.858
CRR073312Silver flowering 119.673
CRR073313Silver flowering 229.212
CRR073314Silver flowering 319.621
CRR073315Gold flowering 128.879
CRR073316Gold flowering 227.997
CRR073317Gold flowering 332.741
CRR073318Tawny withering 138.536
CRR073319Tawny withering 235.644
CRR073320Tawny withering 342.122