Gene detail

Detail information of GWHGAAZE022445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631348.1	0	PREDICTED: protein CHROMATIN REMODELING 19 [Vitis vinifera]
COG	NP_225044.1	7E-55	SWI/SNF family helicase
Swissprot	tr\|Q9ZUL5\|CHR19_ARATH	0	Protein CHROMATIN REMODELING 19 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|M0SS54\|M0SS54_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25930_001}
TAIR10	AT2G02090.1	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72624175	72634493	+
GWHAAZE00000006	mRNA	72624175	72634493	+
GWHAAZE00000006	exon	72624175	72624240	+
GWHAAZE00000006	exon	72624369	72624509	+
GWHAAZE00000006	exon	72624609	72624728	+
GWHAAZE00000006	exon	72624889	72625010	+
GWHAAZE00000006	exon	72625246	72625406	+
GWHAAZE00000006	exon	72627851	72627951	+
GWHAAZE00000006	exon	72628851	72629101	+
GWHAAZE00000006	exon	72629184	72629364	+
GWHAAZE00000006	exon	72630656	72630841	+
GWHAAZE00000006	exon	72630970	72631158	+
GWHAAZE00000006	exon	72631294	72631452	+
GWHAAZE00000006	exon	72633164	72633247	+
GWHAAZE00000006	exon	72633379	72633515	+
GWHAAZE00000006	exon	72633829	72634047	+
GWHAAZE00000006	exon	72634132	72634493	+
GWHAAZE00000006	CDS	72624175	72624240	+
GWHAAZE00000006	CDS	72624369	72624509	+
GWHAAZE00000006	CDS	72624609	72624728	+
GWHAAZE00000006	CDS	72624889	72625010	+
GWHAAZE00000006	CDS	72625246	72625406	+
GWHAAZE00000006	CDS	72627851	72627951	+
GWHAAZE00000006	CDS	72628851	72629101	+
GWHAAZE00000006	CDS	72629184	72629364	+
GWHAAZE00000006	CDS	72630656	72630841	+
GWHAAZE00000006	CDS	72630970	72631158	+
GWHAAZE00000006	CDS	72631294	72631452	+
GWHAAZE00000006	CDS	72633164	72633247	+
GWHAAZE00000006	CDS	72633379	72633515	+
GWHAAZE00000006	CDS	72633829	72634047	+
GWHAAZE00000006	CDS	72634132	72634294	+
GWHAAZE00000006	three_prime_UTR	72634295	72634493	+

Transcript Sequence
>GWHTAAZE022475 ATGAAGCGCGTATTCGACGAAATCTCTGACGACGAGTGGTCGAATCACTCCTTCAAGCCCTCGCGGAACAAATTGGACAACAAATTAGAGGATGATTTGGAGGACGATGATTTCGGTGAGGCTCCGCCGGTGACGAATCGCAGCCGTAGATTTGTGGTTGATGACGACGACGATAGTGACCGAGGGGGTTTAGCTGAAGTGATTGAGGCTTTGCAGAAGTGTGGAAAGATATCGGTGGAGCTTCGAAGAGAGCTGTATGGTTCTTCCGCGGCAGCTTGTGATCGGTATGCTGAAGTTGAGAATTCTTCTGTTAGAATTGTCACTCAGGAGGATATACATGCGGCGTGTGGGGCAGATGGTTCGGGTTTTCAGCCTGTTCTCAAACCATACCAGCTTGTTGGTGTCAACTTTCTTTTGCTGTTGTACAGAAAGAAAGTTGCCGGAGGTAGGCGTATTGGGAGTAGTTCAAATGGGGTGATTAATGGGGCTGTGAGGGGTTTATTATATGACAGAGCAATTGTTAAGGAGATGGGGAGTGGATGTGGGAGAGTTCGTGAAAGGGGGAAAGGAGCAGAGACAGTTACTGATTATGATTCTGTCTGCACTGAAAGAAGAGAAACGGCGGTAAAGATCAATGCAGCAGAGAACGGTGTAGCCGCTAAGAATCCTAACACTTCTGGTGCATCTGTGGCACCAATAGGACCATTCAATGCTATAACGTATTTAACCTTGCTGAACCACTTGGAGCGTGATCCTGGTCCCCATTTAATTGTGTGTCCTGCGTCTGTTTTGGAAAACTGGGAAAGAGAGCTGAAAAAATGGTGTCCCTCATTTACTGTGATCCAATATCATGGAGCGGCACGAGCAGCATATGCAAAAGAGTTGAATTCTATGGCTAAGAATGGAAGGCCACCTCCATTTAATGTTATTCTTGTTTGCTACTCTCTATTTGAACGGCATAGTGTGCAGCAGAAAGATGACCGTAGAATTCTGAAACGCTGGCGATGGAGTTGTGTGCTGATGGATGAAGCTCATGCTTTGAAGGATAAAAACAGCTATAGGTGGAAAAACCTAATGGCTGTTGCACGAAGTGCGAACCAGCGTCTAATGCTTACGGGGACACCACTGCAAAATGATTTGCATGAACTTTGGTCTTTGTTGGAATTTATGATGCCTGATCTCTTTGAAACCAGAGATGTTGACTTGAAAACGCTTTTAAATGCAGAAGACATGGATTTGATTGGTCGAATGAAGTCCATCTTGGGGCCATTTATTCTGAGGCGTTTAAAATCTGATGTAATGCAACAGCTAGTCGCTAAAATACAGCAGGGCCATGAAATGTTACTTCAGGTCGAGTATGTTCACATGGAGAAGCAGCAGGAGGATGCTTATAAAGAAGCCATTGAGGAGTATCGTGCAGCTTCACTTGCTCGTATTGCGAAGTCGTCAAATGTTAACTCCAGTAACTTTGTTCTTCCTAGACGTCAGATTTCGAACTATTTTGTTCAGTTCCGTAAGATTGCAAATCACCCTTTACTGGTGAGACGTATCTATAATGATGAAGATGTTGTTCATTTTGCTAAAATGTTGCATCCGAAAGGTGTGTTTGGATTTGAGTGTAACTTGGACAGAGTAATTGAAGAGCTTAAGAGTTACAATGACTTTTCTATTCACCGGCTTTTACTTTATTATGGTGACGCTGATACTGATAAGAAAGGAGTTCTTTCAGATGACCATGTTATGGTTTCAGCAAAATGTCAGGCATTGGCCAGACTTCTCCCTTCACTACATCAGGGTGGGCATCGGGTTCTCATTTTTAGTCAATGGACGTCAATGCTTGATATCCTAGAGTGGACTTTAGATGTAATTGGGGTTACTTATAGACGTCTTGATGGAAGTACTCAGGTCACGGAAAGACAAACAATAGTAGACACATTCAATAATGACTCTTCGATATTTGCGTGCTTGTTTTCCACGAGGGCTGGAGGTCAGGGTTTGAACTTGACTGGAGCTGATACTGTTATCATACATGACATGGATTTCAACCCCCAGGTTGACCGTCAAGCTGAAGATCGCTGTCATCGCATTGGCCAAACAAAACCCGTTACCATATACAGGCTGGTGACTAAGGACACGGTTGATGAGAATGTGTATGAGATCGCAAAACGGAAGCTAGTTTTGGATGCTGCAGTGCTGGAGTCTGGCATGGAAATGGACAATGAAGGTGAATCATCTGATAAAACTATGGGAGAAATATTGTCATCACTTTTGCTGGTATGAGTAACATCTATTTTATCTTTTCTTTTCGTTTTGGGGGGAGGGGTATGGTAGCCAATTGAAAATCTTCTTTTATTTTTTTCACTGGAAAGGCCAAATGTTGTACAAGTTTAGCTTAAAACATAGAATGTACAATTTATTGAAGTTCCATTGCGGGTATAATTTAGCTATAGTCCTATAATAGGATTGTTTAACACGTGTG

Network for GWHGAAZE022445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	248	513	9.00E-41
PF00271.32	Helicase_C	585	697	1.90E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K14439	SMARCAD1	Signaling pathways regulating pluripotency of stem cells	map04550

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.551
	SRR3591706	second leaf	8.476
	SRR3591707	mature leaf	9.890
	SRR3591708	Shoot apex	12.276
	SRR3591709	Stem	23.200
	SRR3591710	White floral bud	15.092
	SRR3591711	White flower	16.423
	SRR3591712	Green floral bud	13.990
	SRR3591713	Yellow flower	11.394
SRP173429	SRR8316895	Juvenile bud stage	9.960
	SRR8316896	Juvenile bud stage	14.041
	SRR8316897	Juvenile bud stage	7.424
	SRR8316894	Third green stage	4.762
	SRR8316900	Third green stage	13.569
	SRR8316901	Third green stage	13.688
	SRR8316898	Complete white stage	5.753
	SRR8316899	Complete white stage	18.006
	SRR8316903	Complete white stage	11.488
	SRR8316902	Silver flowering stage	6.921
	SRR8316904	Silver flowering stage	10.861
	SRR8316905	Silver flowering stage	5.232
	SRR8316906	Gold flowering stage	15.429
	SRR8316907	Gold flowering stage	16.307
	SRR8316908	Gold flowering stage	16.326
SRP132670	SRR6706286	Control	14.520
	SRR6706287	Light intensity 50%	14.724
	SRR6706288	Light intensity 20%	16.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.205
	CNS0095593	Slightly white alabastrum(diploid) 2	8.907
	CNS0095594	Slightly white alabastrum(diploid) 3	10.433
	CNS0095595	Whole white alabastrum(diploid) 2	9.267
	CNS0095596	Whole white alabastrum(diploid) 3	8.383
	CNS0095597	Whole white alabastrum(diploid) 4	8.955
	CNS0095598	Silvery flower (diploied) 1	10.804
	CNS0095599	Silvery flower (diploied) 2	11.228
	CNS0095600	Silvery flower (diploied) 3	15.274
	CNS0095601	Golden flower (diploid) 1	10.076
	CNS0095602	Golden flower (diploid) 2	13.302
	CNS0095603	Golden flower (diploid) 3	13.394
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.973
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.327
	CNS0095610	Silvery flower (tetraploid) 1	12.811
	CNS0095611	Silvery flower (tetraploid) 2	15.031
	CNS0095612	Silvery flower (tetraploid) 3	12.605
	CNS0095613	Golden flower (tetraploid) 1	7.625
	CNS0095614	Golden flower (tetraploid) 2	11.006
	CNS0095615	Golden flower (tetraploid) 3	11.767
CRA001975	CRR073297	Stem 1	9.765
	CRR073298	Stem 2	10.335
	CRR073299	Stem 3	8.120
	CRR073300	Leaf 1	11.854
	CRR073301	Leaf 2	11.450
	CRR073302	Leaf 3	7.731
	CRR073303	Juvenile bud 1	10.095
	CRR073304	Juvenile bud 2	6.536
	CRR073305	Juvenile bud 3	10.991
	CRR073306	Third green 1	5.699
	CRR073307	Third green 2	4.822
	CRR073308	Third green 3	5.934
	CRR073309	Second white 1	6.752
	CRR073310	Second white 2	4.946
	CRR073311	Second white 3	6.141
	CRR073312	Silver flowering 1	6.391
	CRR073313	Silver flowering 2	4.816
	CRR073314	Silver flowering 3	4.845
	CRR073315	Gold flowering 1	5.496
	CRR073316	Gold flowering 2	8.183
	CRR073317	Gold flowering 3	6.859
	CRR073318	Tawny withering 1	7.545
	CRR073319	Tawny withering 2	7.941
	CRR073320	Tawny withering 3	8.308