Gene detail

Detail information of GWHGAAZE022427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07970.1	0	unnamed protein product [Coffea canephora]
COG	YP_001192956.1	3E-35	two component regulator
Swissprot	tr\|Q8LPB4\|PSKR1_DAUCA	0	Phytosulfokine receptor 1 (Precursor)
trEMBL	tr\|A0A068UHC7\|A0A068UHC7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_29 {ECO:0000313\|EMBL:CDP07970.1}
TAIR10	AT2G02220.1	0	phytosulfokin receptor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72413153	72416107	+
GWHAAZE00000006	mRNA	72413153	72416107	+
GWHAAZE00000006	exon	72413153	72413230	+
GWHAAZE00000006	exon	72413261	72416107	+
GWHAAZE00000006	CDS	72413153	72413230	+
GWHAAZE00000006	CDS	72413261	72416107	+

Transcript Sequence
>GWHTAAZE022457 ATGAGTGTTTTTGAATCAGCAATTGAAGGATGGAATTGGAACACTACCACTTCATCTTCCTCCAATTGCTGTAATTGGCTTGGACTGAACGATCCATTCAACTCGGGTCGGGTCGTGAAGTTGGACCTCTCAAGGAAAAGATTAATGGGCAGGATCTCTGATTCATTTACCAGCTTGAACCAGCTTAGAACCCTAAATCTCTCCCACAATTTCATTAAAGGCTCTCTTCCATTTTCACTGTTAAATTTACCTAATTTAGAAATCTTGGACTTGAGCAACAATGACTTTTCTGGCTTCTTCCCTACAAGCACCAACCTACCATCAATTCGGGTTTTCGACGTATCGGTAAATTCATTTGATGGTCAGGTTCCTTTTGGTATCTGTCGAAACTCGACCCGAATCGAGTCTATGCTTTTAGGAGTGAATTATTTCACTGGAAATCTCATGCCAGATATTGGAAATTGTACTTCCTTGGAGCACCTCTGCCTAGGTGCCAACTTTCTCTCTGGCGGCTTACCGGAAAACCTTTTCCGGCTGCCAAAACTGGCTCGATTAGCTATTCAAGATAACCGGTTTTCAGGCCCGTTGAGCAGCAATATAGGTAACCTTTCTAACCTTGTACGCTTGGATGTTTCCTTAAACAGGTTTTCAGGAAGTATACCGAATGTTTTCCATAGGCTAAGGAAGTTAGAGCTTTTTACAGCTCAGTCGAACAATTTCAGTGGCCTAATGCCCCAATCACTGGCGAATTCTCCGACTATATATTCTCTTAGTTTGAGAAACAACTCATTGTATGGTCCAATTGCATTTAACTGTTCAGCAATGGTGAATCTTACCTCTCTTGATTTGGGTACTAATCTGTTTGTCGAGTCCATTCCTGATAATCTCCCATCTTGCCCGCGTTTGAGAACTGTAAATCTTGCCCGGAACAATTTCTCTGGCCAAATCCCGGAAAGTTTCATGAATTTCCACTCTCTCACTTATCTTTCACTCTCGAATTCCAGCATTTACAACCTTTCATCTGCCCTTGATATTCTGCAGCACTGCAAGAACTTGACCACTTTGGTTCTCACCTTGAATTTTCATAACGAAGAATTGCCTTCTGATCCTAGCCTGGATTTTAAATCCCTCAGGGCTCTCGTTATCGCCAATTGTAGACTCACCGGTTTCTTCCCCCAGTGGTTGACTGGTTCAGCGCAATTACAACTGTTGGATCTGTCTTGGAACAGCTTAAGGGGAACAATTCCGGCCTCATTGGGCAATTTTGGCTATCTCTTTTACTTGGACTTATCGAACAATTCATTTACGGGGGAGATTCCCCAAAGCCTTGCTGCATTACCGAGCCTTATCTCGAGGAATATCTCGTGGGAAGAGCCTTCACCAGATTTCCCATTTTTCTTGAAAAGAAACATAAGTACTAGAGGTTTGCAGTATAACCAAATTTGGAGCTTCCCACCAACGCTCGAACTCAGTAATAACTTTCTCACGGGACCGATTTGGCCGGAGTTTGGGAATCTGAAAAGGGTTCATATTTTGGACCTCAAGTGCAACAATTTATCGGGGAACATTCCAGATAGTTTGTCGGGTATGACGAGCGTTGAGACTTTGGATTTGTCACATAATAATTTGTCTGGAAATCTACCTCCTTCTTTGGTGAGCCTAAGCTTTCTGTCAAAGTTTAGTGTGGCGTACAATAATCTCACTGGAGCTATCCCTAGTGCGGGCCAATTTCAAACATTTCCAAACTCAAGCTTTGAGGGAAACCAAGGTTTATGTGGCGATCATGCTGCCCCTTGTAAACAAAGAAACCAGATCCCAGTTAAATCATCAAGAAAGTTGAGTAAAAGTAAGGGAACTATCATAGGGATGGCTGTTGGGATTGGAATTGGGACAGTTTTTATTCTTGCTCTAATGTTCTTGATTGTTATACGGGCAAGTAGCCGAAAAGAGGTTGATCCCGAAAAGGAGGAAGATGGGGACGAAAAAGATTTGGAGGAACTTGGGTCAAGATTGGTGGTTCTTTTTCAAGACAACGAGAGCAACAAAGAGCTTTGTCTTGATGATCTATTGAAATCTACAAACAGTTTTGATCAATCAAACATCGTTGGGTGTGGGGGATTTGGTCTGGTCTACAAGGCTGCATTACCTGATGGTACCAAAGTTGCAATCAAACGGCTTTCGGGCGACTGCGGTCAAATGGAGAGGGAATTCCAGGCTGAAGTCGAAGCACTCTCAAGAGCTCAGCATCGCAATCTTGTCCTTCTTCAAGGGTATTGTAAATATAAGACTGACAGGCTCTTAATATACTCGTATATGGAGAATGGCAGCTTGGATTTTTGGCTTCACGAGAAGTCAGACGGACCTTCATCACTAGATTGGGACACTAGGGTACAAATTGCTCAAGGGGCTGCTAGAGGGCTTCTTTACTTGCACCATTCTTGTGAACCCCGTATCCTTCACAGAGACATTAAGTCAAGCAATATTCTTCTAGACAAGAATTTTGTAGCCCACTTGGCAGATTTTGGCCTAGCCCGGCTCATGCTACCCTACGACACACATGTGACCACCGATCTTGTAGGTACACTTGGGTACATCCCTCCTGAGTATGGGCAAGCTTCTGTTGCGACTTATAAGGGCGACGTGTATAGTTTTGGGGTTGTCCTTTTGGAGCTTCTTACTGGGAAAAGGCCGATGGATATGTGTAAACCAAAGGGAAGCCGAGATATGATTTCTTGGGTGTTTCAAATGAGGAGAGAGAAGAGGGAAACTGAGGTGTTTGATCCGTTCATATATGACAAACAACATGCTAAAGAAATGTTATGGGTTCTTGAGATTGCTTGCCTTTGCTTGAGTGATTGTCCTAAAATAAGGCCCTCGACTCAACAGCTTGTTTCGTGGTTGGATAACGTTGATATTGATGATTAG

Network for GWHGAAZE022427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	39	96	1.30E-07
PF13855.7	LRR_8	277	335	6.90E-07
PF00560.34	LRR_1	400	422	0.25
PF00560.34	LRR_1	427	445	1.4
PF13855.7	LRR_8	487	543	2.70E-08
PF00069.26	Pkinase	697	965	5.50E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.112
	SRR3591706	second leaf	6.069
	SRR3591707	mature leaf	6.430
	SRR3591708	Shoot apex	11.048
	SRR3591709	Stem	8.692
	SRR3591710	White floral bud	14.950
	SRR3591711	White flower	17.907
	SRR3591712	Green floral bud	12.070
	SRR3591713	Yellow flower	13.823
SRP173429	SRR8316895	Juvenile bud stage	2.332
	SRR8316896	Juvenile bud stage	3.199
	SRR8316897	Juvenile bud stage	1.554
	SRR8316894	Third green stage	2.623
	SRR8316900	Third green stage	5.479
	SRR8316901	Third green stage	5.413
	SRR8316898	Complete white stage	3.625
	SRR8316899	Complete white stage	7.892
	SRR8316903	Complete white stage	7.998
	SRR8316902	Silver flowering stage	7.370
	SRR8316904	Silver flowering stage	10.035
	SRR8316905	Silver flowering stage	3.383
	SRR8316906	Gold flowering stage	16.522
	SRR8316907	Gold flowering stage	15.792
	SRR8316908	Gold flowering stage	19.174
SRP132670	SRR6706286	Control	5.431
	SRR6706287	Light intensity 50%	6.490
	SRR6706288	Light intensity 20%	5.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.905
	CNS0095593	Slightly white alabastrum(diploid) 2	7.407
	CNS0095594	Slightly white alabastrum(diploid) 3	3.166
	CNS0095595	Whole white alabastrum(diploid) 2	3.993
	CNS0095596	Whole white alabastrum(diploid) 3	3.207
	CNS0095597	Whole white alabastrum(diploid) 4	4.362
	CNS0095598	Silvery flower (diploied) 1	7.605
	CNS0095599	Silvery flower (diploied) 2	3.408
	CNS0095600	Silvery flower (diploied) 3	12.807
	CNS0095601	Golden flower (diploid) 1	6.741
	CNS0095602	Golden flower (diploid) 2	18.602
	CNS0095603	Golden flower (diploid) 3	18.507
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.775
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.639
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.714
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.319
	CNS0095610	Silvery flower (tetraploid) 1	9.621
	CNS0095611	Silvery flower (tetraploid) 2	8.004
	CNS0095612	Silvery flower (tetraploid) 3	12.700
	CNS0095613	Golden flower (tetraploid) 1	9.157
	CNS0095614	Golden flower (tetraploid) 2	13.903
	CNS0095615	Golden flower (tetraploid) 3	24.395
CRA001975	CRR073297	Stem 1	8.428
	CRR073298	Stem 2	8.194
	CRR073299	Stem 3	7.045
	CRR073300	Leaf 1	12.335
	CRR073301	Leaf 2	10.432
	CRR073302	Leaf 3	8.664
	CRR073303	Juvenile bud 1	9.729
	CRR073304	Juvenile bud 2	9.286
	CRR073305	Juvenile bud 3	17.674
	CRR073306	Third green 1	12.286
	CRR073307	Third green 2	9.549
	CRR073308	Third green 3	12.509
	CRR073309	Second white 1	10.286
	CRR073310	Second white 2	10.860
	CRR073311	Second white 3	11.932
	CRR073312	Silver flowering 1	31.450
	CRR073313	Silver flowering 2	25.522
	CRR073314	Silver flowering 3	24.738
	CRR073315	Gold flowering 1	2.408
	CRR073316	Gold flowering 2	4.383
	CRR073317	Gold flowering 3	3.040
	CRR073318	Tawny withering 1	11.562
	CRR073319	Tawny withering 2	9.856
	CRR073320	Tawny withering 3	10.457