Gene detail

Detail information of GWHGAAZE022426

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045571.1	0	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
COG	YP_004775215.1	9E-18	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q84MA9\|Y1063_ARATH	0	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (Precursor)
trEMBL	tr\|A0A061E9T2\|A0A061E9T2_THECC	0	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY01403.1}
TAIR10	AT1G10850.1	8E-130	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72372989	72377353	-
GWHAAZE00000006	mRNA	72372989	72377353	-
GWHAAZE00000006	exon	72376024	72377353	-
GWHAAZE00000006	exon	72372989	72373650	-
GWHAAZE00000006	CDS	72376024	72377353	-
GWHAAZE00000006	CDS	72372989	72373650	-

Transcript Sequence
>GWHTAAZE022456 ATGGAAAATCCTCTGTTTTCAAGGTACTCTCTTTTTTTCTTCTTCTCGTTGTGTTTGTTATTCTTTCCTATTCCGTTTGTGAGTTCAGTAGGCGATGCCGAAGCACTATTGGCCTTAAAATCATCAATAGATCAATTCAACTCGCTGCAATGGCTAGGAAGCGATGTCTGCAAATGGCCAGGGATCAAAGAATGTATTAATGGCAGAGTCACAAAACTTGTGTTAGAGTCCTTGAACTTGACCGGAGAGTTAGATGAAAGAACCCTCAATCAATTAGATCAGCTACGTGTTCTCAGCTTCAAAGACAATTCTCTTTACGGCCAAATCCCCAATCTTTCTGGCATAATAAACCTCAAATCTCTTTACCTTAATAATAACAACTTCTCTGGCGAATTCCCTAGCTCTATCTCAATCCTCCACCGCCTCAAAGTGGTGGTTCTCTCTAACAACCAAATCTCTGGCCCCATTCCAGATACACTTCTCAATCTCCAGCGACTTTACATTCTTCAGCTGCAGGAAAATCAGTTAACCGGAGAAATTCCGGCACTGAACCAATCTAGTCTCAGATTCTTGAACGTGTCCAATAACCAACTATCTGGTCAGATTCCGGTGACCCCTGCTTTGGTTCGATTTAACACATCATCATTTTCCGGTAACATTAACTTATGTGGCGAGCAAATTCAGAGTCCATGTAACGGGTTTGCTCCGTCAAATAGTCCTTTGTATTCACAAGTACCTAAATCAACACCAAATCATCACCGATGGAGGATTATAGCAATAATTGCAGGAAGTGTTGGGGGATTTCTATTATTATGTATTTTAGTAACTTTACTTGCAATCTGTGGTAGTAAAAGACGGAGAAGAATGAGCAGAGTGGTGAAGGGTAAAGGGATAGTTGGTGGTGAAGAAGGGGTTGAAGAGGGGGGCGATAATGGTGGTGGCAGTGGTGGTAATAATGGGGGAAAACGAGGGGGGATTACATGGGAAGGGGAAGGGGGAGTGGGGAATTTGGTGTTTTGTGGAGGAGGGGATACACCGGAGATGAGTTATAGTTTGGAGGAGCTGTTGAAGGCTTCGGCCGAGACACTGGGGAGGGGAACGGTGGGGAGTACTTACAAGGCGGTGATGGAGACGGGATTTATAGTCACGGTGAAGAGATTGAAGGATGCTAGGTACCCCCGGGTGGAGGAGTTCAGGCGGCACATGGGGGTAATTGGGAAGCTCCGGCATCCTAACCTAGTGCCTCTCCAGGCTTATTTTCAGGCTAAGGAAGAAAGGCTCCTTGTTTATGATTACTTCCCTAATGGCAGTCTCTTCTCTCTCATTCACGGTTCAAGAACATCAGCTGGTGGGAAGCCTCTTCACTGGACATCCTGCCTCAAAATATCCGAGGACTTGGCCACTGGACTCCTATACATCCACCAAAACCCCGGTCTAACACACGGCAATTTAAAGTCCTCCAACGTACTCCTAGGCTCGGACTTCGAGTCCTGCCTAACTGACTATGGCCTCACAACATTCCGAGACCCAGACCCCGTAGAAGAATCCAGCGCCTCTTCCCTCTTCTACCGAGCCCCCGAGTGCCGAGACACCCGTAAACCCCTCACCCAACAAGCAGACGTTTACAGCTTCGGTGTCCTTTTACTGGAGCTCTTGACCGGCAAGACTCCTTTCCAAGACCTGGTTCAAGAACATGGGTCGGATATCCCTAGGTGGGTTCGTTCGGTCCGCGAAGAAGAGATCGATTCGGGCGATGACCCGGGCTCGAGTAACGAGGCTGCCTCGGAGGAAAAATTGGCGGCTCTTTTGAACATTGCAATGGCGTGTGTGTCTGTTGTGCCGGAGGAACGACCAGTGATGAGGGAGGTGTTGAGGATGATAAGGGAGACAAGGGCTGAAGTGCAAGTGTCTTCTAACAGTAGTGATCATTCGCCGGGGAGGTGGTCGGATACCGTTCAAAGCTTGCCGAGGGACGAACATTTGACCATATGA

Network for GWHGAAZE022426

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	62	0.00074
PF00069.26	Pkinase	360	625	6.70E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.885
	SRR3591706	second leaf	5.606
	SRR3591707	mature leaf	0.977
	SRR3591708	Shoot apex	22.532
	SRR3591709	Stem	6.116
	SRR3591710	White floral bud	3.744
	SRR3591711	White flower	1.333
	SRR3591712	Green floral bud	9.848
	SRR3591713	Yellow flower	0.178
SRP173429	SRR8316895	Juvenile bud stage	10.732
	SRR8316896	Juvenile bud stage	8.597
	SRR8316897	Juvenile bud stage	4.598
	SRR8316894	Third green stage	4.170
	SRR8316900	Third green stage	9.793
	SRR8316901	Third green stage	7.293
	SRR8316898	Complete white stage	0.639
	SRR8316899	Complete white stage	5.371
	SRR8316903	Complete white stage	0.967
	SRR8316902	Silver flowering stage	0.563
	SRR8316904	Silver flowering stage	1.041
	SRR8316905	Silver flowering stage	0.273
	SRR8316906	Gold flowering stage	0.770
	SRR8316907	Gold flowering stage	0.753
	SRR8316908	Gold flowering stage	0.994
SRP132670	SRR6706286	Control	5.165
	SRR6706287	Light intensity 50%	5.772
	SRR6706288	Light intensity 20%	6.340
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.844
	CNS0095593	Slightly white alabastrum(diploid) 2	11.950
	CNS0095594	Slightly white alabastrum(diploid) 3	6.499
	CNS0095595	Whole white alabastrum(diploid) 2	6.337
	CNS0095596	Whole white alabastrum(diploid) 3	5.530
	CNS0095597	Whole white alabastrum(diploid) 4	3.864
	CNS0095598	Silvery flower (diploied) 1	3.130
	CNS0095599	Silvery flower (diploied) 2	2.076
	CNS0095600	Silvery flower (diploied) 3	1.731
	CNS0095601	Golden flower (diploid) 1	1.381
	CNS0095602	Golden flower (diploid) 2	0.897
	CNS0095603	Golden flower (diploid) 3	1.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.959
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.454
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.972
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.925
	CNS0095610	Silvery flower (tetraploid) 1	1.892
	CNS0095611	Silvery flower (tetraploid) 2	1.600
	CNS0095612	Silvery flower (tetraploid) 3	1.314
	CNS0095613	Golden flower (tetraploid) 1	0.267
	CNS0095614	Golden flower (tetraploid) 2	0.484
	CNS0095615	Golden flower (tetraploid) 3	0.251
CRA001975	CRR073297	Stem 1	20.773
	CRR073298	Stem 2	17.925
	CRR073299	Stem 3	20.471
	CRR073300	Leaf 1	13.242
	CRR073301	Leaf 2	12.934
	CRR073302	Leaf 3	12.351
	CRR073303	Juvenile bud 1	8.233
	CRR073304	Juvenile bud 2	5.511
	CRR073305	Juvenile bud 3	11.171
	CRR073306	Third green 1	2.748
	CRR073307	Third green 2	3.749
	CRR073308	Third green 3	3.764
	CRR073309	Second white 1	0.723
	CRR073310	Second white 2	0.429
	CRR073311	Second white 3	0.348
	CRR073312	Silver flowering 1	0.102
	CRR073313	Silver flowering 2	0.273
	CRR073314	Silver flowering 3	0.035
	CRR073315	Gold flowering 1	1.027
	CRR073316	Gold flowering 2	1.368
	CRR073317	Gold flowering 3	0.990
	CRR073318	Tawny withering 1	8.924
	CRR073319	Tawny withering 2	4.061
	CRR073320	Tawny withering 3	11.123