Gene detail

Detail information of GWHGAAZE022424

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596703.1	3.7472E-179	PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Nicotiana tomentosiformis]
COG	YP_004303697.1	5E-32	2OG-Fe(II) oxygenase
Swissprot	tr\|O49561\|G2OX8_ARATH	2E-130	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|B9RY49\|B9RY49_RICCO	1E-175	Gibberellin 20-oxidase, putative {ECO:0000313\|EMBL:EEF43741.1}
TAIR10	AT4G21200.1	3E-103	gibberellin 2-oxidase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72353321	72354989	+
GWHAAZE00000006	mRNA	72353321	72354989	+
GWHAAZE00000006	exon	72353321	72353808	+
GWHAAZE00000006	exon	72354304	72354631	+
GWHAAZE00000006	exon	72354753	72354989	+
GWHAAZE00000006	CDS	72353321	72353808	+
GWHAAZE00000006	CDS	72354304	72354631	+
GWHAAZE00000006	CDS	72354753	72354989	+

Transcript Sequence
>GWHTAAZE022454 ATGGTTCAATCAGACGACCCGAATCCGAACCCAAACCCGCCTCTCCTTCGCAACTACGCGAAACTTGTGTGTCAGTCTGACCACAAGGATAAGGTTAAGAGTGTTGACCAGAGTAGGAATGAGGGGGTAATAGTTATGGAGGAATGCGAGTTGCCACTAATAGACCTTGGCGGTTTGAGGAGTGAGAGAGAAGAGGAGAGAGAGAGCTGCGCAATGGCGATATGTAGGGCATCGTCGGAATGGGGGTTCTTTCAAGTGGTAAACCATGGGATTAGTATTGAATTGTTGAGGAAGATGAGGAGAGAGCAAGTTAAGTTGTTTGAAGCACCCTTTGAGAGCAAGGAGAATTGTGGGCTTTTTAATAATTCATATAGGTGGGGTAATAGGACTGCTACTTCTCCAAAGCAGTTTTCTTGGTCTGAGGCTTTTCATGTACCTCTTACCAAGATTTCAGAACAACATTGTTCCGGAGAATTCACCTCTTTAAGGGAAGTGATGGAGGAATATGCGAGTGCAATGCAAGAAGTAGCACGGGTGCTAGCCGGAGTTCTAGTAATGAATATGGGTCACAATAATTCACTCTTTAACGAAAAATGTGACGAGAGCAATTGCTTCCTCCGGCTAAACCGGTACCCACCCTGTCCTGTATCGCCAGAAGTACTACCATTCGGGTTAGTGCCACACACTGACAGCGATTTTTTAACAATACTACATCAAGACCAAGTAGGTGGACTTCAACTCATGAAAGATTCCAAATGGGTAGCCGTTAAACCCAACGAAAATGCCCTCATTGTCAACATTGGTGATCTTTTTCAGGCGTGGAGTAATGATGTGTACAAGAGCGTAGAGCACAAAGTGATGGTAAATGCAAAGGTGGAGAGATACTCAATTGCATATTTTCTATGCCCTTTTTATGACTCTTTGATAGGGAGCTGCAAAGAGCCTTCTGTTTACAGGAATTTTACTTTTGGCGAATACAGAGGCCAAATCCAAAATGATGTTAAAACCACTGGCCACAAAGTTGGTCTTCCCAGATTTCTACTTTCCAATTGA

Network for GWHGAAZE022424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	51	145	4.20E-17
PF03171.21	2OG-FeII_Oxy	205	303	3.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.104
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.090
	SRR3591709	Stem	0.452
	SRR3591710	White floral bud	0.840
	SRR3591711	White flower	4.195
	SRR3591712	Green floral bud	0.313
	SRR3591713	Yellow flower	1.497
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.056
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.630
	SRR8316899	Complete white stage	0.354
	SRR8316903	Complete white stage	1.463
	SRR8316902	Silver flowering stage	4.043
	SRR8316904	Silver flowering stage	2.696
	SRR8316905	Silver flowering stage	0.687
	SRR8316906	Gold flowering stage	3.755
	SRR8316907	Gold flowering stage	4.202
	SRR8316908	Gold flowering stage	3.460
SRP132670	SRR6706286	Control	0.158
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.217
	CNS0095593	Slightly white alabastrum(diploid) 2	0.492
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.086
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.241
	CNS0095598	Silvery flower (diploied) 1	3.444
	CNS0095599	Silvery flower (diploied) 2	3.020
	CNS0095600	Silvery flower (diploied) 3	3.998
	CNS0095601	Golden flower (diploid) 1	0.682
	CNS0095602	Golden flower (diploid) 2	0.663
	CNS0095603	Golden flower (diploid) 3	0.447
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.725
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.338
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	5.748
	CNS0095611	Silvery flower (tetraploid) 2	3.778
	CNS0095612	Silvery flower (tetraploid) 3	0.543
	CNS0095613	Golden flower (tetraploid) 1	2.454
	CNS0095614	Golden flower (tetraploid) 2	5.655
	CNS0095615	Golden flower (tetraploid) 3	0.128
CRA001975	CRR073297	Stem 1	0.166
	CRR073298	Stem 2	0.141
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.078
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.171
	CRR073305	Juvenile bud 3	0.085
	CRR073306	Third green 1	0.800
	CRR073307	Third green 2	0.887
	CRR073308	Third green 3	1.113
	CRR073309	Second white 1	0.260
	CRR073310	Second white 2	0.467
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	0.468
	CRR073313	Silver flowering 2	0.492
	CRR073314	Silver flowering 3	1.136
	CRR073315	Gold flowering 1	0.159
	CRR073316	Gold flowering 2	0.025
	CRR073317	Gold flowering 3	0.056
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000