Gene detail

Detail information of GWHGAAZE022409

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275011.1	0	PREDICTED: eukaryotic initiation factor 4A-3 [Vitis vinifera]
COG	YP_004719581.1	3E-86	ATP-dependent RNA helicase
Swissprot	tr\|P41380\|IF4A3_NICPL	0	Eukaryotic initiation factor 4A-3
trEMBL	tr\|F6HHF5\|F6HHF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51651.1}
TAIR10	AT3G19760.1	0	eukaryotic initiation factor 4A-III

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72098346	72106049	+
GWHAAZE00000006	mRNA	72098346	72106049	+
GWHAAZE00000006	exon	72098346	72098659	+
GWHAAZE00000006	exon	72100822	72101062	+
GWHAAZE00000006	exon	72102031	72102138	+
GWHAAZE00000006	exon	72102237	72102356	+
GWHAAZE00000006	exon	72104071	72104238	+
GWHAAZE00000006	exon	72105554	72105640	+
GWHAAZE00000006	exon	72105936	72106049	+
GWHAAZE00000006	CDS	72098346	72098659	+
GWHAAZE00000006	CDS	72100822	72101062	+
GWHAAZE00000006	CDS	72102031	72102138	+
GWHAAZE00000006	CDS	72102237	72102356	+
GWHAAZE00000006	CDS	72104071	72104238	+
GWHAAZE00000006	CDS	72105554	72105640	+
GWHAAZE00000006	CDS	72105936	72106049	+

Transcript Sequence
>GWHTAAZE022439 ATGGAAGCAGCGACGGGGTCGGTGGTTCCGGCGAACAGAGGACGGAGGGCGGCTATGGTGGACGACGAGAAGCTGGTGTTCGAAACTTCCAAGGGCGTCGAACCAATAATGAGCTTCGATGAGATGGGAATTAAAGACGACCTCCTCCGTGGGATCTACCAGTACGGCTTCGAGAAACCCTCCGCTATTCAACAGAGAGCCGTTCTACCTATCATATCCGGCCGTGACGTCATCGCCCAAGCCCAATCAGGTACCGGTAAAACCTCCATGATTGCCCTTGCTGTTTGCCAGATTGCAGACACCAGCTCCAGAGAGGTCCAAGCTCTGATCTTGTCTCCTACAAGGGAGCTGGCAGCTCAAACAGAGAAAGTTATATTGACAGTTGGTAATTTCATTAATATACAAGCCCATGCATGCATTGGAGGTAAAAGTGTTGGCGAGGATATTAGAAAACTGGAACATGGAGTTCAGGTTGTATCTGGAACTCCAGGAAGAGTTTGTGACATGATCAAGAGGAGAACATTACGAACCCGAGCCATCAAGTTATTAGTTCTTGTTTGTTTGATTTCTGCCACCCTCCCTAACGAAATTTTGGAGATGACGAGCAAATTTATGACAGATCCTGTGCGAATCCTCGTGAAACGTGATGAGTTGACTCTAGAGGGTATCAAGCAGTTCTTTGTTGCAGTAGAAAGAGAAGACTGGAAGTTTGATACTCTATGTGATCTGTATGATACCCTTACCATCACCCAGGCTGTTATTTTCTGCAACACAAAGCGGAAGGTGGATTGGCTAACTGAGAAGATGCGTGACAATAATTTTACCGTTTCATCGATGCACGGTGACATGCCTCAGAAGGAGCGCGATGCAATTATGTCGGAGTTTCGGTCCGGTACAACTCGCGTTCTGATCACAACAGATGTATGGGCCAGGGGTTTGGATGTTCAGCAGGTTTCCCTGGTGATTAATTATGATCTTCCAAACAATCGAGAGCTTTACATTCATCGCATTGGTCGTTCCGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAAACGGATGATATCAAGATTCTAAGAGACATAGAACAGTACTACAGTACCCAGATTGACGAAATGCCGATGAATGTGGCTGATTTGATATAA

Network for GWHGAAZE022409

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	62	185	1.30E-27
PF00271.32	Helicase_C	236	344	8.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13025	EIF4A3, FAL1	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	152.201
	SRR3591706	second leaf	71.819
	SRR3591707	mature leaf	55.203
	SRR3591708	Shoot apex	149.111
	SRR3591709	Stem	109.393
	SRR3591710	White floral bud	147.869
	SRR3591711	White flower	131.750
	SRR3591712	Green floral bud	104.485
	SRR3591713	Yellow flower	110.014
SRP173429	SRR8316895	Juvenile bud stage	65.180
	SRR8316896	Juvenile bud stage	93.887
	SRR8316897	Juvenile bud stage	41.104
	SRR8316894	Third green stage	32.182
	SRR8316900	Third green stage	91.861
	SRR8316901	Third green stage	89.627
	SRR8316898	Complete white stage	61.858
	SRR8316899	Complete white stage	141.401
	SRR8316903	Complete white stage	97.131
	SRR8316902	Silver flowering stage	54.000
	SRR8316904	Silver flowering stage	76.198
	SRR8316905	Silver flowering stage	36.272
	SRR8316906	Gold flowering stage	113.505
	SRR8316907	Gold flowering stage	115.066
	SRR8316908	Gold flowering stage	116.222
SRP132670	SRR6706286	Control	79.829
	SRR6706287	Light intensity 50%	78.245
	SRR6706288	Light intensity 20%	79.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	86.955
	CNS0095593	Slightly white alabastrum(diploid) 2	76.872
	CNS0095594	Slightly white alabastrum(diploid) 3	74.126
	CNS0095595	Whole white alabastrum(diploid) 2	75.892
	CNS0095596	Whole white alabastrum(diploid) 3	75.627
	CNS0095597	Whole white alabastrum(diploid) 4	72.846
	CNS0095598	Silvery flower (diploied) 1	108.909
	CNS0095599	Silvery flower (diploied) 2	100.275
	CNS0095600	Silvery flower (diploied) 3	144.426
	CNS0095601	Golden flower (diploid) 1	106.084
	CNS0095602	Golden flower (diploid) 2	156.760
	CNS0095603	Golden flower (diploid) 3	147.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.941
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	124.673
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.959
	CNS0095610	Silvery flower (tetraploid) 1	133.829
	CNS0095611	Silvery flower (tetraploid) 2	152.570
	CNS0095612	Silvery flower (tetraploid) 3	144.102
	CNS0095613	Golden flower (tetraploid) 1	95.377
	CNS0095614	Golden flower (tetraploid) 2	125.780
	CNS0095615	Golden flower (tetraploid) 3	179.639
CRA001975	CRR073297	Stem 1	95.978
	CRR073298	Stem 2	95.503
	CRR073299	Stem 3	113.635
	CRR073300	Leaf 1	103.386
	CRR073301	Leaf 2	99.043
	CRR073302	Leaf 3	97.298
	CRR073303	Juvenile bud 1	106.278
	CRR073304	Juvenile bud 2	90.135
	CRR073305	Juvenile bud 3	119.092
	CRR073306	Third green 1	100.263
	CRR073307	Third green 2	111.488
	CRR073308	Third green 3	109.077
	CRR073309	Second white 1	100.655
	CRR073310	Second white 2	88.792
	CRR073311	Second white 3	91.670
	CRR073312	Silver flowering 1	96.902
	CRR073313	Silver flowering 2	91.465
	CRR073314	Silver flowering 3	90.140
	CRR073315	Gold flowering 1	68.150
	CRR073316	Gold flowering 2	81.043
	CRR073317	Gold flowering 3	75.346
	CRR073318	Tawny withering 1	138.851
	CRR073319	Tawny withering 2	107.897
	CRR073320	Tawny withering 3	157.471