Gene detail

Detail information of GWHGAAZE022392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	DAA62949.1	1.33074E-33	TPA: hypothetical protein ZEAMMB73_343052 [Zea mays]
COG	YP_004458431.1	2E-11	50S ribosomal protein L44E
Swissprot	tr\|O23290\|RL36A_ARATH	8E-35	60S ribosomal protein L36a
trEMBL	tr\|A0A096PVP5\|A0A096PVP5_MAIZE	5E-34	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G009412_P03}
TAIR10	AT3G23390.1	6E-20	Zinc-binding ribosomal protein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71769790	71770813	+
GWHAAZE00000006	mRNA	71769790	71770813	+
GWHAAZE00000006	exon	71769790	71769969	+
GWHAAZE00000006	exon	71770209	71770813	+
GWHAAZE00000006	CDS	71769790	71769969	+
GWHAAZE00000006	CDS	71770209	71770292	+
GWHAAZE00000006	three_prime_UTR	71770293	71770813	+

Transcript Sequence
>GWHTAAZE022422 GTGAACGTTCCGAAGACAAAGAAGACTTACTGCAAGAATAAGGCATGTAAGAAGCACACCTTGCATAAGGTTACCCAATATAAGAAGGGAAAGGATAGTTTGGCTGCACAGGGAAAGCGCCGTTATGATCGTAAGCAGTCAGGTTATGGTGGACAAACAAAACCTGTTTTCCACAAAAAGGAACAAGAGAGTTGGCGAGGAGGAACAAGAGCCAAGCACCTCTCAGGGAAGAGAGAGAGCAGGAACCACAAGTGTTTGAAGTGAAGTAATGTTCACGATGGTTACTTGGTAGCATATATGCGTACAGTATAGACTAACCTAAATGAATATAGGCATAGCCCATTAGAGAAAGAGCTGCCAGGAGATGTATTATCCTCTCTATAAGGGCAAGCCTTCATTTATGGGGAAAGGCTTAGCTTTGTAAGATTAGAGGTATGTCCTTTTGTATAATGAGAAGAACACAAGGGGTTAGTGATGACCTCTCAAGTGGGTAAAAGAATAGTGTACGTGTCCTTTTGGATAGAGAGTGGGCCTTGAGTGTTTAATGACTACTCAAGTGTATAAAGGAGTAGTTTCTTTCTTCAAGTCCAGATGGTCGGTCCGGTGCCAGTGTGGTGTGGTAACAAAAAAGGCCAGAGCTTAAGCCACCAAGCCACTATCCTCTTGTTCCCAATAACTAATCAGTAGACTGGGGAGCCATTCGGAACCTGATCTTTCTGTGGTGGCTCCATAGCTCGGTACCCTGATTTTCCTTTCAAGTTTTTGTTTCTTTCCCTTGTACATAT

Network for GWHGAAZE022392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00935.20	Ribosomal_L44	18	62	5.70E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02929	RP-L44e, RPL44	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.176
	SRR3591706	second leaf	29.155
	SRR3591707	mature leaf	38.045
	SRR3591708	Shoot apex	46.250
	SRR3591709	Stem	35.532
	SRR3591710	White floral bud	35.855
	SRR3591711	White flower	52.063
	SRR3591712	Green floral bud	49.259
	SRR3591713	Yellow flower	30.654
SRP173429	SRR8316895	Juvenile bud stage	19.875
	SRR8316896	Juvenile bud stage	32.154
	SRR8316897	Juvenile bud stage	18.734
	SRR8316894	Third green stage	17.269
	SRR8316900	Third green stage	46.325
	SRR8316901	Third green stage	39.774
	SRR8316898	Complete white stage	10.066
	SRR8316899	Complete white stage	35.444
	SRR8316903	Complete white stage	21.186
	SRR8316902	Silver flowering stage	20.239
	SRR8316904	Silver flowering stage	17.071
	SRR8316905	Silver flowering stage	9.741
	SRR8316906	Gold flowering stage	24.500
	SRR8316907	Gold flowering stage	31.403
	SRR8316908	Gold flowering stage	39.626
SRP132670	SRR6706286	Control	33.044
	SRR6706287	Light intensity 50%	33.195
	SRR6706288	Light intensity 20%	35.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.355
	CNS0095593	Slightly white alabastrum(diploid) 2	41.993
	CNS0095594	Slightly white alabastrum(diploid) 3	36.916
	CNS0095595	Whole white alabastrum(diploid) 2	41.144
	CNS0095596	Whole white alabastrum(diploid) 3	42.663
	CNS0095597	Whole white alabastrum(diploid) 4	34.024
	CNS0095598	Silvery flower (diploied) 1	37.990
	CNS0095599	Silvery flower (diploied) 2	39.095
	CNS0095600	Silvery flower (diploied) 3	32.780
	CNS0095601	Golden flower (diploid) 1	32.369
	CNS0095602	Golden flower (diploid) 2	31.818
	CNS0095603	Golden flower (diploid) 3	33.144
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.958
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.534
	CNS0095610	Silvery flower (tetraploid) 1	47.139
	CNS0095611	Silvery flower (tetraploid) 2	42.705
	CNS0095612	Silvery flower (tetraploid) 3	38.101
	CNS0095613	Golden flower (tetraploid) 1	32.088
	CNS0095614	Golden flower (tetraploid) 2	35.504
	CNS0095615	Golden flower (tetraploid) 3	25.184
CRA001975	CRR073297	Stem 1	21.732
	CRR073298	Stem 2	20.458
	CRR073299	Stem 3	21.935
	CRR073300	Leaf 1	24.892
	CRR073301	Leaf 2	22.949
	CRR073302	Leaf 3	30.593
	CRR073303	Juvenile bud 1	26.746
	CRR073304	Juvenile bud 2	22.447
	CRR073305	Juvenile bud 3	20.104
	CRR073306	Third green 1	8.420
	CRR073307	Third green 2	12.870
	CRR073308	Third green 3	10.284
	CRR073309	Second white 1	11.181
	CRR073310	Second white 2	8.766
	CRR073311	Second white 3	6.112
	CRR073312	Silver flowering 1	6.919
	CRR073313	Silver flowering 2	8.497
	CRR073314	Silver flowering 3	7.547
	CRR073315	Gold flowering 1	20.376
	CRR073316	Gold flowering 2	15.198
	CRR073317	Gold flowering 3	14.417
	CRR073318	Tawny withering 1	19.747
	CRR073319	Tawny withering 2	15.742
	CRR073320	Tawny withering 3	18.910