Gene detail

Detail information of GWHGAAZE022386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365590.1	4.47324E-95	PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Solanum tuberosum]
Swissprot	tr\|Q9LT17\|BBR_ARATH	2E-74	E3 ubiquitin ligase BIG BROTHER-related
trEMBL	tr\|D7TEV5\|D7TEV5_VITVI	1E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29028.3}
TAIR10	AT3G19910.1	3E-50	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71723570	71725476	+
GWHAAZE00000006	mRNA	71723570	71725476	+
GWHAAZE00000006	exon	71723570	71723879	+
GWHAAZE00000006	exon	71723984	71724036	+
GWHAAZE00000006	exon	71724760	71724804	+
GWHAAZE00000006	exon	71724905	71725026	+
GWHAAZE00000006	exon	71725119	71725227	+
GWHAAZE00000006	exon	71725423	71725476	+
GWHAAZE00000006	CDS	71723570	71723879	+
GWHAAZE00000006	CDS	71723984	71724036	+
GWHAAZE00000006	CDS	71724760	71724804	+
GWHAAZE00000006	CDS	71724905	71725026	+
GWHAAZE00000006	CDS	71725119	71725227	+
GWHAAZE00000006	CDS	71725423	71725476	+

Transcript Sequence
>GWHTAAZE022416 ATGATGCTAACAATGAACACTGGTGGAAGTGATTATGCGAGTTGGGAAGCTGGAAGCTATATGCACGAGGATGATGATGATTTCGATGACACCACTGAGGAAGAATATGATATTTCTGATGCAGATTACGATGACGAAGAAGATGCATTTGATGTGCATGCTCATGCTGAAGCTGGAGAGGGTATTAACCCAAGCGGTGAGTTAGATCCCTCTTCTTTTCCTTCTGATGAGGCCTATGCAAGAGCCCTACAAGATGCTGAGGAACGAGAGATGGCTGCTAGATTACTGGCTGCAGCTGGGATACATGATATGGTTGTAGCGGAAGCTGAGGAGGAGATCGAGGATAATGATGATGATTCGCAGGACACATCATGGCCGGAGGTTGATCCCGATGAACTATCTTATGAGGAATTGCTTGCATTGGGTGAAGTAGTTGGAACCGAGAGCAGAGGGCTTTCTGCCGATACAATTGCCTCTTTGACTTCAATGAATTATAAGACACAAGGCAGTCAAGGTGGAAGCAGCGACACTTGTGTTATTTGCCGGTTTGACTATGAGGATGATGACACCTTGACTGTGCTTTCTTGCAAACATTCCTACCACTCCGAGTGCATAAACAATTGGTTGCAAATAAACAAGGTGTGTCCTATTTGCAGCGCTGAGGTCTCTCTAGCTGGAATCAGCAGCAGCTAG

Network for GWHGAAZE022386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	176	218	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.237
	SRR3591706	second leaf	11.136
	SRR3591707	mature leaf	10.999
	SRR3591708	Shoot apex	10.684
	SRR3591709	Stem	27.309
	SRR3591710	White floral bud	26.236
	SRR3591711	White flower	38.217
	SRR3591712	Green floral bud	18.103
	SRR3591713	Yellow flower	49.438
SRP173429	SRR8316895	Juvenile bud stage	9.554
	SRR8316896	Juvenile bud stage	18.619
	SRR8316897	Juvenile bud stage	12.426
	SRR8316894	Third green stage	7.760
	SRR8316900	Third green stage	18.553
	SRR8316901	Third green stage	21.025
	SRR8316898	Complete white stage	13.685
	SRR8316899	Complete white stage	28.489
	SRR8316903	Complete white stage	16.518
	SRR8316902	Silver flowering stage	14.028
	SRR8316904	Silver flowering stage	18.925
	SRR8316905	Silver flowering stage	9.452
	SRR8316906	Gold flowering stage	32.217
	SRR8316907	Gold flowering stage	26.533
	SRR8316908	Gold flowering stage	48.571
SRP132670	SRR6706286	Control	14.521
	SRR6706287	Light intensity 50%	15.556
	SRR6706288	Light intensity 20%	15.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.635
	CNS0095593	Slightly white alabastrum(diploid) 2	16.874
	CNS0095594	Slightly white alabastrum(diploid) 3	20.121
	CNS0095595	Whole white alabastrum(diploid) 2	13.741
	CNS0095596	Whole white alabastrum(diploid) 3	13.315
	CNS0095597	Whole white alabastrum(diploid) 4	13.087
	CNS0095598	Silvery flower (diploied) 1	17.208
	CNS0095599	Silvery flower (diploied) 2	13.911
	CNS0095600	Silvery flower (diploied) 3	34.422
	CNS0095601	Golden flower (diploid) 1	22.700
	CNS0095602	Golden flower (diploid) 2	27.681
	CNS0095603	Golden flower (diploid) 3	23.420
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.298
	CNS0095610	Silvery flower (tetraploid) 1	50.424
	CNS0095611	Silvery flower (tetraploid) 2	46.136
	CNS0095612	Silvery flower (tetraploid) 3	32.900
	CNS0095613	Golden flower (tetraploid) 1	39.557
	CNS0095614	Golden flower (tetraploid) 2	42.294
	CNS0095615	Golden flower (tetraploid) 3	48.026
CRA001975	CRR073297	Stem 1	23.367
	CRR073298	Stem 2	22.868
	CRR073299	Stem 3	19.117
	CRR073300	Leaf 1	16.599
	CRR073301	Leaf 2	19.664
	CRR073302	Leaf 3	17.021
	CRR073303	Juvenile bud 1	17.105
	CRR073304	Juvenile bud 2	14.597
	CRR073305	Juvenile bud 3	16.324
	CRR073306	Third green 1	11.825
	CRR073307	Third green 2	10.702
	CRR073308	Third green 3	13.430
	CRR073309	Second white 1	15.236
	CRR073310	Second white 2	13.102
	CRR073311	Second white 3	10.990
	CRR073312	Silver flowering 1	11.491
	CRR073313	Silver flowering 2	10.182
	CRR073314	Silver flowering 3	11.794
	CRR073315	Gold flowering 1	11.683
	CRR073316	Gold flowering 2	18.121
	CRR073317	Gold flowering 3	11.918
	CRR073318	Tawny withering 1	12.218
	CRR073319	Tawny withering 2	9.064
	CRR073320	Tawny withering 3	14.708