Gene detail

Detail information of GWHGAAZE022367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18453.1	8.5692E-128	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	7E-37	Transcription factor DIVARICATA
trEMBL	tr\|A0A068VFI4\|A0A068VFI4_COFCA	3E-128	Coffea canephora DH200=94 genomic scaffold, scaffold_237 {ECO:0000313\|EMBL:CDP18453.1}
TAIR10	AT5G08520.1	1E-53	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71283977	71286531	+
GWHAAZE00000006	mRNA	71283977	71286531	+
GWHAAZE00000006	exon	71283977	71284368	+
GWHAAZE00000006	exon	71286105	71286531	+
GWHAAZE00000006	CDS	71283977	71284368	+
GWHAAZE00000006	CDS	71286105	71286531	+

Transcript Sequence
>GWHTAAZE022397 ATGGCATCTGATGGATCAGGGAGTAGTTCTATATGGAGCAGAGATGATGACAAGGCATTTGAGAATGCTCTGGCAACTTATCCCGAGGACTCTGTAGATCGGTGGGAGAACATTTTGGCAGATGTTCCAGGGAAATCCTTAGAAGAGATTAAACATCACTACGATCTCTTAGTTGATGATGTTGACAGGATCGAATCTGGATTGGTGCCTCTGCCTTGCTATAAATCTTCTTCAGATAGATCGGCAAATGCGAATCCTGTGGATGATGAAGGGACTGGTAAGAAAGGTGGAAGTTCGGGCCACTTGAACAGTGATTCCAATCATGGAGGTAAGGGTTCAAGGTCAGATCAGGAGCGTCGCAAAGGAATTGCTTGGACAGAGGAGGAGCACAAACGAACGCCTACTCAAGTGGCGAGCCACGCACAAAAGTACTTCAATCGTTTAAACTCTACCAACAAAGATAGGAGGCGATCTAGCATTCATGACATCACCAGCGTCGAGGGCGGTGACATATCGGTGCCTCAAGTACCAATCACAGGTCAGACAACAAATGGTTCTTCTGCAGCAGGAGGAGGTTCATCGGGAAAATCAGGCAAACAATCGCCTCAAGCTCCTCCTGCACCGTCAGCAGTTGGCATGTATGGCGGAACTACTATAGGTCAACCGGTAGGTGGACCCCTTGTTTCAGCAGTTGGAACACCTGTGAATCTACCTCCACAAGCACACATGGCTTTTGGCGCGGGCCCTGTTCCAGGATCGGTGGTACCCGGTGCACCGATGAATATGTACCCGATGGCTCACCCATCTGCTCATAGGTAA

Network for GWHGAAZE022367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.431
	SRR3591706	second leaf	1.669
	SRR3591707	mature leaf	1.526
	SRR3591708	Shoot apex	2.414
	SRR3591709	Stem	3.222
	SRR3591710	White floral bud	2.496
	SRR3591711	White flower	1.129
	SRR3591712	Green floral bud	1.983
	SRR3591713	Yellow flower	0.941
SRP173429	SRR8316895	Juvenile bud stage	3.590
	SRR8316896	Juvenile bud stage	5.583
	SRR8316897	Juvenile bud stage	0.502
	SRR8316894	Third green stage	1.844
	SRR8316900	Third green stage	5.173
	SRR8316901	Third green stage	4.450
	SRR8316898	Complete white stage	2.133
	SRR8316899	Complete white stage	7.238
	SRR8316903	Complete white stage	4.310
	SRR8316902	Silver flowering stage	0.919
	SRR8316904	Silver flowering stage	1.805
	SRR8316905	Silver flowering stage	0.690
	SRR8316906	Gold flowering stage	1.178
	SRR8316907	Gold flowering stage	2.726
	SRR8316908	Gold flowering stage	1.024
SRP132670	SRR6706286	Control	3.075
	SRR6706287	Light intensity 50%	3.822
	SRR6706288	Light intensity 20%	3.721
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.131
	CNS0095593	Slightly white alabastrum(diploid) 2	3.409
	CNS0095594	Slightly white alabastrum(diploid) 3	4.055
	CNS0095595	Whole white alabastrum(diploid) 2	4.017
	CNS0095596	Whole white alabastrum(diploid) 3	4.022
	CNS0095597	Whole white alabastrum(diploid) 4	2.857
	CNS0095598	Silvery flower (diploied) 1	5.139
	CNS0095599	Silvery flower (diploied) 2	2.987
	CNS0095600	Silvery flower (diploied) 3	2.545
	CNS0095601	Golden flower (diploid) 1	3.187
	CNS0095602	Golden flower (diploid) 2	5.240
	CNS0095603	Golden flower (diploid) 3	4.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.386
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.904
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.461
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.108
	CNS0095610	Silvery flower (tetraploid) 1	0.737
	CNS0095611	Silvery flower (tetraploid) 2	0.716
	CNS0095612	Silvery flower (tetraploid) 3	0.967
	CNS0095613	Golden flower (tetraploid) 1	0.204
	CNS0095614	Golden flower (tetraploid) 2	0.270
	CNS0095615	Golden flower (tetraploid) 3	0.438
CRA001975	CRR073297	Stem 1	14.101
	CRR073298	Stem 2	14.020
	CRR073299	Stem 3	10.696
	CRR073300	Leaf 1	9.608
	CRR073301	Leaf 2	9.726
	CRR073302	Leaf 3	10.673
	CRR073303	Juvenile bud 1	9.225
	CRR073304	Juvenile bud 2	8.015
	CRR073305	Juvenile bud 3	11.244
	CRR073306	Third green 1	3.505
	CRR073307	Third green 2	4.041
	CRR073308	Third green 3	5.436
	CRR073309	Second white 1	4.454
	CRR073310	Second white 2	3.083
	CRR073311	Second white 3	0.363
	CRR073312	Silver flowering 1	0.869
	CRR073313	Silver flowering 2	1.648
	CRR073314	Silver flowering 3	1.461
	CRR073315	Gold flowering 1	12.167
	CRR073316	Gold flowering 2	11.869
	CRR073317	Gold flowering 3	11.577
	CRR073318	Tawny withering 1	11.079
	CRR073319	Tawny withering 2	7.910
	CRR073320	Tawny withering 3	9.827