Gene detail

Detail information of GWHGAAZE022354

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249637.1	1.8075E-103	PREDICTED: transcription factor TCP7 [Nelumbo nucifera]
Swissprot	tr\|Q9FMX2\|TCP7_ARATH	3E-80	Transcription factor TCP7
trEMBL	tr\|F6HIN5\|F6HIN5_VITVI	8E-103	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52081.1}
TAIR10	AT5G23280.1	4E-53	TCP family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71136875	71137877	-
GWHAAZE00000006	mRNA	71136875	71137877	-
GWHAAZE00000006	exon	71137494	71137877	-
GWHAAZE00000006	exon	71136875	71137378	-
GWHAAZE00000006	five_prime_UTR	71137746	71137877	-
GWHAAZE00000006	CDS	71137494	71137745	-
GWHAAZE00000006	CDS	71136875	71137378	-

Transcript Sequence
>GWHTAAZE022384 AACATTCACCACCTACTCAGCAACACCACCTCAATCCTCCCCCAAATTATACATATACATATACCCCCATTACTTTAATTTTATCTCATACCCCCTTATTTCCCCACACCTTCAATCAGAATCATATCTCCCATGTCTACGTCAGAACCAGCAACTGTTAATGGCGTCACTAACGCCCCAATCAACACCCCCCAGAAGCACCACCCCCCTGGTAACGGCGCTTTGACAGTTAAGAAACCTCCGTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGCATCCGCATGCCCATCATATGCGCCGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCAGAACCATCCATCATTGCCGCCACAGGAACTGGCACTACTCCAGCTACCTTTACCTCTGTCGCGGTTCGGAACACCACCAACCCCTCCATGTCCGCCGCCCTTGACCAGAAGACATTGCAGCAGCACCTAATGTCTCCGTCGCCGTTCATACTCGGTAAGCGTTTCCGTTCCGACGATGATTGCCTCGACGGAGTGATAGCCAAGGACGATGACCTGGCAGCAGCGGCGGCGGGCGGTGGTTTCTGGACGCTGCCGTCGAGGCCGGACTTCGGTCAGGTTTGGAGCTTCGCGACGGCGCATCAGGAGATGGTGATACCGTCGCCGGTGACCATGGCGTCCCAGTCTTCGATTACTGGGAGGTTCTTCCAGCAGCAGCAACCGATGGGGGAGGCGTCGGCGGCTAGGGTTGGGAATTATCTTCCGATCAGTCAAGGTCACCTCAATTTGCTTGCGTCATTGTCCAGTCCCGTTGCCGGAGGGAGAGAAGATGATACTCGTTGA

Network for GWHGAAZE022354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03634.14	TCP	38	122	5.30E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	pathway	mapID
K16221	TCP21, CHE	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.845
	SRR3591706	second leaf	14.714
	SRR3591707	mature leaf	7.172
	SRR3591708	Shoot apex	96.455
	SRR3591709	Stem	22.666
	SRR3591710	White floral bud	28.714
	SRR3591711	White flower	37.930
	SRR3591712	Green floral bud	16.399
	SRR3591713	Yellow flower	8.903
SRP173429	SRR8316895	Juvenile bud stage	49.565
	SRR8316896	Juvenile bud stage	27.737
	SRR8316897	Juvenile bud stage	20.550
	SRR8316894	Third green stage	7.694
	SRR8316900	Third green stage	8.103
	SRR8316901	Third green stage	9.308
	SRR8316898	Complete white stage	1.784
	SRR8316899	Complete white stage	34.316
	SRR8316903	Complete white stage	4.807
	SRR8316902	Silver flowering stage	2.687
	SRR8316904	Silver flowering stage	3.348
	SRR8316905	Silver flowering stage	1.666
	SRR8316906	Gold flowering stage	9.821
	SRR8316907	Gold flowering stage	16.055
	SRR8316908	Gold flowering stage	15.104
SRP132670	SRR6706286	Control	12.911
	SRR6706287	Light intensity 50%	15.022
	SRR6706288	Light intensity 20%	12.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.677
	CNS0095593	Slightly white alabastrum(diploid) 2	42.402
	CNS0095594	Slightly white alabastrum(diploid) 3	25.636
	CNS0095595	Whole white alabastrum(diploid) 2	29.285
	CNS0095596	Whole white alabastrum(diploid) 3	2.915
	CNS0095597	Whole white alabastrum(diploid) 4	15.529
	CNS0095598	Silvery flower (diploied) 1	75.371
	CNS0095599	Silvery flower (diploied) 2	54.472
	CNS0095600	Silvery flower (diploied) 3	19.771
	CNS0095601	Golden flower (diploid) 1	49.564
	CNS0095602	Golden flower (diploid) 2	50.529
	CNS0095603	Golden flower (diploid) 3	48.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.535
	CNS0095606	Slightly white alabastrum(tetraploid) 3	89.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.827
	CNS0095610	Silvery flower (tetraploid) 1	10.830
	CNS0095611	Silvery flower (tetraploid) 2	31.797
	CNS0095612	Silvery flower (tetraploid) 3	18.037
	CNS0095613	Golden flower (tetraploid) 1	6.597
	CNS0095614	Golden flower (tetraploid) 2	11.501
	CNS0095615	Golden flower (tetraploid) 3	2.975
CRA001975	CRR073297	Stem 1	41.872
	CRR073298	Stem 2	29.900
	CRR073299	Stem 3	60.749
	CRR073300	Leaf 1	11.209
	CRR073301	Leaf 2	15.806
	CRR073302	Leaf 3	9.598
	CRR073303	Juvenile bud 1	9.242
	CRR073304	Juvenile bud 2	3.067
	CRR073305	Juvenile bud 3	17.988
	CRR073306	Third green 1	20.199
	CRR073307	Third green 2	12.606
	CRR073308	Third green 3	16.165
	CRR073309	Second white 1	13.685
	CRR073310	Second white 2	9.849
	CRR073311	Second white 3	5.077
	CRR073312	Silver flowering 1	4.639
	CRR073313	Silver flowering 2	6.055
	CRR073314	Silver flowering 3	7.703
	CRR073315	Gold flowering 1	21.181
	CRR073316	Gold flowering 2	30.425
	CRR073317	Gold flowering 3	31.403
	CRR073318	Tawny withering 1	46.868
	CRR073319	Tawny withering 2	33.273
	CRR073320	Tawny withering 3	38.149