Gene detail

Detail information of GWHGAAZE022317

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003554576.1	0	PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Glycine max]
COG	YP_003825625.1	6E-152	prolyl-tRNA synthetase
trEMBL	tr\|I1NBI4\|I1NBI4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40930.3}
TAIR10	AT3G62120.2	0	Class II aaRS and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70380508	70386986	+
GWHAAZE00000006	mRNA	70380508	70386986	+
GWHAAZE00000006	exon	70380508	70380544	+
GWHAAZE00000006	exon	70380660	70380830	+
GWHAAZE00000006	exon	70380944	70381029	+
GWHAAZE00000006	exon	70382246	70382338	+
GWHAAZE00000006	exon	70382672	70382788	+
GWHAAZE00000006	exon	70383050	70383237	+
GWHAAZE00000006	exon	70383800	70383866	+
GWHAAZE00000006	exon	70384167	70384289	+
GWHAAZE00000006	exon	70384414	70384566	+
GWHAAZE00000006	exon	70385306	70385590	+
GWHAAZE00000006	exon	70385702	70385920	+
GWHAAZE00000006	exon	70386447	70386540	+
GWHAAZE00000006	exon	70386670	70386986	+
GWHAAZE00000006	five_prime_UTR	70380508	70380544	+
GWHAAZE00000006	five_prime_UTR	70380660	70380790	+
GWHAAZE00000006	CDS	70380791	70380830	+
GWHAAZE00000006	CDS	70380944	70381029	+
GWHAAZE00000006	CDS	70382246	70382338	+
GWHAAZE00000006	CDS	70382672	70382788	+
GWHAAZE00000006	CDS	70383050	70383237	+
GWHAAZE00000006	CDS	70383800	70383866	+
GWHAAZE00000006	CDS	70384167	70384289	+
GWHAAZE00000006	CDS	70384414	70384566	+
GWHAAZE00000006	CDS	70385306	70385590	+
GWHAAZE00000006	CDS	70385702	70385920	+
GWHAAZE00000006	CDS	70386447	70386540	+
GWHAAZE00000006	CDS	70386670	70386734	+
GWHAAZE00000006	three_prime_UTR	70386735	70386986	+

Transcript Sequence
>GWHTAAZE022347 TGTCCAGCCGAGGCGAAGAGGCGACTCTCTATCGAAGTTCTCTCTCTCGTTGTATTAGGGTTTACAGTTCGAGCTTTGTTTTTCGTTCCATTTACTGATTGTTAATCCGTATCAATTCTTCTGACCTAGAATTTGATTTTGAAGGTAGTGGGATTAAAATCGGAGGACATGTCTACTAGTGCTGTTAAGAAACCTATTGCCAAGAGTGGGGGTAAAAAGAAGGAGGTGAAAAAAGAGACTGGACTTGGTCTTACTCACAAGAAGGATGAAAATTTTGGGGAGTGGTACTCTGAGGTGGTTGTTAATGGTGAAATGATCGAGTACTATGACATATCAGGTTGTTATATTTTAAGGCCATGGACAATGTCCATATGGGAAATCATGCACGATTTTTTTGATAAAGAAATAAAGGCAATGAAGATCAATAATTGCTACTTTCCGCTTTTTGTATCCCCTGGTGTACTGCAACGAGAAAAGGATCACATAGAGGGTTTTGCTCCAGAGGTTGCATGGGTTACAAAATCTGGAGAATCTGACTTGGAGGTTCCTATTGCAATCCGTCCCACAAGTGAGACTGTTATGTATCCTTATTACTCAAAGTGGATTAGAGGACATCGAGACCTACCTTTGAAACTAAACCAGTGGTGCAATGTTGTTCGATGGGAGTTCAGCAATCCTACTCCTTTCATTAGGAGTCGAGAATTCCTTTGGCAAGAAGGGCATACGGCATTCGCGACCAAGGAGGAGGCAGATGCAGAGGTCCTTGAGATATTGGAACTTTATCGACGGATATATGAAGAATATCTTGCAATACCAGTTGTGAAGGGTAAAAAGAGCGAGATGGAGAAGTTCGCTGGTGGCCTTTACACAACAAGTGTTGAGGCTTTTATCCCAAACACAGGTCGAGGTATACAAGGGGCCACATCACATTGCTTGGGCCAAAATTTTGCGAAAATGTTCGAAATAAATTTTGAGAATGAGAAGGGAGAAAAGGCTATGGTTTGGCAAAATTCCTGGGCGTACAGTACTCGGACGATTGGGGTGATGGTGATGGTTCATGGGGATGACAAAGGTTTAGTGCTGCCACCTAAAGTGGCATCTGTCCAAGTTGTCGTGATTCCAGTGCCTTACAAAGACGTGGACACACAAGCCATTTTAGATGCCTGCACTAATGCTGTGAAAACCTTGAGCGAAGCTGGTTTACGTGTTGAGGCAGATCTTAGAGATAACTATTCACCTGGATGGAAGTACTCCCATTGGGAAATGAAAGGTGTTCCCCTGAGAATTGAAATTGGCCCAAAAGACATGGCAAATAATCAGGTACGTGCGGTTCGCCGTGACAATTTTGCTAAGGTGGATATTCCAATGGCCACGTTGGTTGAGCAAGTAAATGAGATGTTGGCCGATATTCAACAAAATCTATTTGACATCGCGAAGCAAAAACGAGATGCTTGTATTAAGGTTGTATATACATGGAAGGAATTTGCTGAAGCACTTGGCGAAAAGAAAATGATCTTAGCTCCTTGGTGTGATGATGAGGAAGTGGAGAAGGACGTGAAAGCACGAACAAAGGGTGAGATGGGAGCAGCTAAGTCGCTTTGCTCTCCATTTGATCAGCCTGAACTGCCTGAAGGGACTCTATGCTTTGCGTCGGATAGGCCAGCAGTGAAATGGACCTACTGGGGAAGGAGTTACTGACAATCGGAAATCTTGTTATTATTGGTGTTAATCTTCACTCTTGCATCATTACATACTCTGCGAATTTTGGTTTTAGAAAGGAATTGTTTGACACTGAGTAGTTACACGTTGGTGCCCCATATTTGTTAATTTCATATATTTCCATTCTGTAACTTCTGGTTGAGATTGATTTTAATCAAGTACTAAGTTGGTTTTATACTTCGTTGATCTTTTAAAAGTATATATACCGATGCATTCATTACCATTTTGTTG

Network for GWHGAAZE022317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00587.26	tRNA-synt_2b	128	294	4.20E-18
PF03129.21	HGTP_anticodon	313	409	7.20E-20
PF09180.12	ProRS-C_1	436	509	2.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01881	PARS, proS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006433	biological_process	prolyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004827	molecular_function	proline-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	145.020
	SRR3591706	second leaf	68.462
	SRR3591707	mature leaf	51.816
	SRR3591708	Shoot apex	129.123
	SRR3591709	Stem	106.929
	SRR3591710	White floral bud	103.902
	SRR3591711	White flower	100.874
	SRR3591712	Green floral bud	158.734
	SRR3591713	Yellow flower	103.507
SRP173429	SRR8316895	Juvenile bud stage	68.221
	SRR8316896	Juvenile bud stage	98.155
	SRR8316897	Juvenile bud stage	49.209
	SRR8316894	Third green stage	36.346
	SRR8316900	Third green stage	129.323
	SRR8316901	Third green stage	120.472
	SRR8316898	Complete white stage	38.228
	SRR8316899	Complete white stage	144.093
	SRR8316903	Complete white stage	58.816
	SRR8316902	Silver flowering stage	32.123
	SRR8316904	Silver flowering stage	42.550
	SRR8316905	Silver flowering stage	18.899
	SRR8316906	Gold flowering stage	67.864
	SRR8316907	Gold flowering stage	65.078
	SRR8316908	Gold flowering stage	75.895
SRP132670	SRR6706286	Control	131.516
	SRR6706287	Light intensity 50%	135.131
	SRR6706288	Light intensity 20%	155.250
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	108.495
	CNS0095593	Slightly white alabastrum(diploid) 2	114.649
	CNS0095594	Slightly white alabastrum(diploid) 3	103.802
	CNS0095595	Whole white alabastrum(diploid) 2	108.507
	CNS0095596	Whole white alabastrum(diploid) 3	120.798
	CNS0095597	Whole white alabastrum(diploid) 4	100.644
	CNS0095598	Silvery flower (diploied) 1	99.437
	CNS0095599	Silvery flower (diploied) 2	85.684
	CNS0095600	Silvery flower (diploied) 3	91.032
	CNS0095601	Golden flower (diploid) 1	90.351
	CNS0095602	Golden flower (diploid) 2	92.227
	CNS0095603	Golden flower (diploid) 3	88.377
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.461
	CNS0095605	Slightly white alabastrum(tetraploid) 2	109.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	149.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	93.909
	CNS0095608	Whole white alabastrum(tetraploid) 2	85.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	149.998
	CNS0095610	Silvery flower (tetraploid) 1	93.926
	CNS0095611	Silvery flower (tetraploid) 2	102.705
	CNS0095612	Silvery flower (tetraploid) 3	85.989
	CNS0095613	Golden flower (tetraploid) 1	71.626
	CNS0095614	Golden flower (tetraploid) 2	96.131
	CNS0095615	Golden flower (tetraploid) 3	78.858
CRA001975	CRR073297	Stem 1	94.608
	CRR073298	Stem 2	90.695
	CRR073299	Stem 3	81.559
	CRR073300	Leaf 1	123.619
	CRR073301	Leaf 2	112.056
	CRR073302	Leaf 3	108.094
	CRR073303	Juvenile bud 1	118.526
	CRR073304	Juvenile bud 2	93.704
	CRR073305	Juvenile bud 3	107.943
	CRR073306	Third green 1	34.801
	CRR073307	Third green 2	28.509
	CRR073308	Third green 3	34.996
	CRR073309	Second white 1	37.972
	CRR073310	Second white 2	34.291
	CRR073311	Second white 3	34.211
	CRR073312	Silver flowering 1	32.192
	CRR073313	Silver flowering 2	38.124
	CRR073314	Silver flowering 3	28.170
	CRR073315	Gold flowering 1	41.670
	CRR073316	Gold flowering 2	49.520
	CRR073317	Gold flowering 3	30.911
	CRR073318	Tawny withering 1	85.332
	CRR073319	Tawny withering 2	77.966
	CRR073320	Tawny withering 3	89.294