Gene detail

Detail information of GWHGAAZE022314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090143.1	0	PREDICTED: ABC transporter B family member 4-like [Sesamum indicum]
COG	YP_629357.1	5E-110	ABC transporter permease
Swissprot	tr\|O80725\|AB4B_ARATH	0	ABC transporter B family member 4
trEMBL	tr\|A0A061DZI3\|A0A061DZI3_THECC	0	ATP binding cassette subfamily B4 isoform 1 {ECO:0000313\|EMBL:EOX95438.1}
TAIR10	AT2G47000.1	0	ATP binding cassette subfamily B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70340390	70346025	+
GWHAAZE00000006	mRNA	70340390	70346025	+
GWHAAZE00000006	exon	70340390	70340479	+
GWHAAZE00000006	exon	70340689	70340743	+
GWHAAZE00000006	exon	70341055	70341230	+
GWHAAZE00000006	exon	70341325	70341546	+
GWHAAZE00000006	exon	70341634	70341872	+
GWHAAZE00000006	exon	70342047	70342572	+
GWHAAZE00000006	exon	70342881	70343154	+
GWHAAZE00000006	exon	70343314	70344233	+
GWHAAZE00000006	exon	70344471	70344737	+
GWHAAZE00000006	exon	70344832	70345095	+
GWHAAZE00000006	exon	70345190	70345483	+
GWHAAZE00000006	exon	70345672	70346025	+
GWHAAZE00000006	CDS	70340390	70340479	+
GWHAAZE00000006	CDS	70340689	70340743	+
GWHAAZE00000006	CDS	70341055	70341230	+
GWHAAZE00000006	CDS	70341325	70341546	+
GWHAAZE00000006	CDS	70341634	70341872	+
GWHAAZE00000006	CDS	70342047	70342572	+
GWHAAZE00000006	CDS	70342881	70343154	+
GWHAAZE00000006	CDS	70343314	70344233	+
GWHAAZE00000006	CDS	70344471	70344737	+
GWHAAZE00000006	CDS	70344832	70345095	+
GWHAAZE00000006	CDS	70345190	70345483	+
GWHAAZE00000006	CDS	70345672	70346025	+

Transcript Sequence
>GWHTAAZE022344 ATGCCCCTTATGACTGTGATATTTGGGGAGTTAGTTGATAAATTTGGAGAGACTGCAGATACCAATGTCATTGTTCATGAAGTTTCCAAGGTATCACTTAAATTTGTGTACTTGGCTCTGGGTTCTGGTGCTGCAGCATTTTCACATGTGGTCTTCTGGATGATCACAGGGGAGAGACAAGCCGCCCGAATTAGAAGTTTATACTTGAAAACCATATTGAGGCAAGATATTGGATTCTTTGATAAGGACGCTAACACCGGAGAAATTATTGAGAGGATGTCAGGTGATACTGTCATTATTCAGGATGTTATCGGCGACAAGGTTGGAAAATTCATGCAGCTGGTAGCTACATTCTTGGGAGGCTTTGTGATAGCTTTTAGCAAGGGATGGCTTCTTGCCCTAATCTTGATATCTTCAATTCCTCCTCTTGTTATCTCTGCCGCTGTAATGACCGTCCTTATGGCAAAGCTAACCTCGCAAGGACAAACTGCTTACTCAGTAGCATCAACTGTGGTTGAACAAACAATTGGATCAATTAGAACTGTTGCATCATTTACCGGGGAGAGGCAAGCTAGAGCTAAATACGACAAGTCCCTTATCATAGCTTACAATGCTGGTGTGCAAGAGGGCTTGGTCACTGGGTTGGGTTCTGGCATATTTATGTTGGCAATATTTTGCACTTATGCTTTGGCTATATGGGTTGGTGCGAGAATGATCTTAGAAAAAAAATATACAGGTGGAAGGGTCATAAATGTAATATTGGCTGTGTTTACTGGTGCCTTTGCTTTAGGGCAGGCATCTACATGCTTGAGTGCATTTGCTGCTGGACGAGTTGCAGCATTTAAAATGTTTCATACCATCAGTAGAAAGTCAGAGATAGACCATTACTACGCCCATGGACAGAAACTAGATGATATTACTGGTGCTATTGAACTAAGAGAGGTTTATTTTAGTTATCCAACAAGACCTGAAGAGAGAATATTTAATGGATTCTCTTTCTCAATACCGAGTGGAACAACTGCAGCATTGGTTGGACAGAGTGGAAGTGGCAAATCAACAGTGATCAGCTTGATAGAGAGGTTCTATGATCCACAAGGAGGTGAAGTTCTTATAGATGGTATCAATCTCAAAGATTTTCAGATAAGTTGGATCAGAAGCAAAATCGGTCTTGTTAGCCAGGAACCTGTATTGTTCACATCAAGCATTAAAGATAATATTGCCTATGGGAAGGACATGGCAACCCTCGAAGAGATTAAAGCAGCTGCTGAGCTTGCTAATGCTGCCAAGTTCATAGATAAACTTCCAGAGGGACTTGACACAATGGTTGGTGTGCAAGGAACTCAGCTTTCTGGGGGACAAAAGCAAAGAATTGCTATAGCTAGAGCAATTCTAAAAGACCCCAGAATTCTACTTCTTGACGAAGCTACAAGTGCTCTTGATGCAGAGTCTGAGAGGACTGTACAAGAGGCACTGGACAAGATCATGGTCAACCGAACCACCCTCATTGTAGCCCATCGCTTGAGTACAGTTAAAAATGCTGATATGATTGCTGTCATTCATCAAGGAAAGATTGTTGAAACAGGTTCACGTTATGAGCTACTACAAGATCCTGAAGGAGCATACTGCCAACTCATCCGATTGCAAGAACATGGCAAAGATTCAGAACTAAATGTTGGAAGCGGTCACTATAGGCCAGAGATTACTAGGGACTCTGGAAGACTTTCAAGTATGCTGATTTCCCACTTACAGTATATGAGCCCAGGATCACCTGGAATTGGAAATAGTAGCCGGCACTCATTCTCAGTTTCATTTGGTGTACCCACTGGGATCAGCACATTGGCAACTGCAGTATCAGAACCCACAGCTCTGGTTTCAGCATTGGCTCCGGCAACAGCTCCAGCTCCATCACCAATGGAAGCAGAAAAAGAAATCTCACTTCGCCGCTTGGCCTATCTGAACAAGCCAGAGATCCCAATTTTATTAATTGGCTCCGTAGCTGCGATTGCCAATGGTGTCATATTACCTATTTTTGGGGTTCTACTTTCTATCATTATCAGAACTTACTACGAGCCATCTCATAACCTTCGTAAGGATTCAAGATACTGGGCATTAATGTTTGTCATTCTAGGCTTAGTTACTTTACTTGCAGCGCCATTAAGCACGTACTTTTTTGCTGTTGCGGGATGCAAGTTAATCAAAAGAATTCGACTAATGTGCTTTGAGAAGGTTGTTCAAATGGAAATAAGCTGGTTTGATAAAACAGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCTACCGATGCTTTAGCTGTGCGAGGTCTTGTTGGGGACACGCTTGCTTTGCTCGTTCAGAACACCGCAACAGTTATTGCTGGTTTAATTATTGGTTTCAAAGCAAGCTGGCAATTGGCTCTTCTAATTCTTTTTTTGCTACCTCTTGTGGGACTAAATGGATACCTTCAAACTAAGTTCTTAACTGGATTTAATGCTAATACAAAGAAATTGTACGAGGATGCAAGTCAAGTTGCTAGTGATGCAGTTGGGAGTATTAGAACAGTAGCTTCTTTTTGTGCTGAAGAGAAGGTATTGAAACTATACGAAAAGAAATGTTATGGTGCTACCAGAGCTGGAGTAAGACAAGGGTTGATTAGCGGTACAGGTTTTGGGCTGTCCATGTTCTTCCTATTTATTGTCTACGCAATTAGTTTTTATGCTGGTGCTCGACTTGTTGAGGCTGGAAAGATAACATTCACTGAAGTTTTTCGTGTATTTTTGGGTCTAAGTATGGCCGCCCTTGGAATTTCTCAATCAGGCACCATTGCTCCTGACACTGGTAAAGCAAAGAGTGCTGCTGCTTCTGTCTTTGCTCTTCTTGACCAGCAATCAAAAGTAGACTTGAGTGATGACTCAGGCACGACATTGGAGAATGTGAAGGGAGATATTGAGTTTCGGCATTTGAGTTTCAAATATCCCACTAGACCGGATGTTTGTATTTTCAGAGATCTCTGCTTGGTCATCCACGCTGGCAAGACTGTTGCTCTGGTTGGAGAAAGTGGGAGTGGAAAGTCAACTGTGATGTCTTTGTTGCAAAGATTTTATGACCCTGATTCCGGCTTCATTACACTTGATGGAGTTGAAATCGAGAAGCTAAATTTGAAATGGTTGAGGCAGCAGATGGGTCTAGTAAGCCAGGAGCCTGTCTTGTTCAATGACACAATCCGGGCCAACATTGCTTATGGAAAGGAAGGTTATGCAACAGAAGCAGATATTATAGCTGCAGCAGAGTTTGCAAATGCTCACAATTTCATCAGTGGGTTACAACAGGGGTATGATACAACAGTGGGTGAGAGAGGGATTCAGTTGTCTGGTGGACAGAAGCAAAGGGTGGCAATTGCACGAGCCATTGTGAAGGCACCGAAAATACTATTGCTAGATGAGGCTACCAGTGCTCTAGATGCTGCATCTGAGAAGGTGGTTCAAGAAGCACTAGATCGAATCATGGTGAACAAAACCACATTAGTGGTTGCCCATAGGCTGTCCACAATTAGAGGGGCCGATTTAATAGCATTGGTTAAAAATGGAGTGATTGCAGAAAATGGGAAGCACGAAAGCTTGATGAATATTAAGGACGGTATATATGCCTCCCTAGTAGCATTGCAAACCAGAGCTTCATCTTAA

Network for GWHGAAZE022314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	1	261	5.70E-59
PF00005.28	ABC_tran	329	477	9.40E-34
PF00664.24	ABC_membrane	660	929	2.30E-56
PF00005.28	ABC_tran	1002	1150	1.90E-33

Protein Sequence

>GWHPAAZE022330
MPLMTVIFGELVDKFGETADTNVIVHEVSKVSLKFVYLALGSGAAAFSHVVFWMITGERQAARIRSLYLKTILRQDIGFFDKDANTGEIIERMSGDTVIIQDVIGDKVGKFMQLVATFLGGFVIAFSKGWLLALILISSIPPLVISAAVMTVLMAKLTSQGQTAYSVASTVVEQTIGSIRTVASFTGERQARAKYDKSLIIAYNAGVQEGLVTGLGSGIFMLAIFCTYALAIWVGARMILEKKYTGGRVINVILAVFTGAFALGQASTCLSAFAAGRVAAFKMFHTISRKSEIDHYYAHGQKLDDITGAIELREVYFSYPTRPEERIFNGFSFSIPSGTTAALVGQSGSGKSTVISLIERFYDPQGGEVLIDGINLKDFQISWIRSKIGLVSQEPVLFTSSIKDNIAYGKDMATLEEIKAAAELANAAKFIDKLPEGLDTMVGVQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDKIMVNRTTLIVAHRLSTVKNADMIAVIHQGKIVETGSRYELLQDPEGAYCQLIRLQEHGKDSELNVGSGHYRPEITRDSGRLSSMLISHLQYMSPGSPGIGNSSRHSFSVSFGVPTGISTLATAVSEPTALVSALAPATAPAPSPMEAEKEISLRRLAYLNKPEIPILLIGSVAAIANGVILPIFGVLLSIIIRTYYEPSHNLRKDSRYWALMFVILGLVTLLAAPLSTYFFAVAGCKLIKRIRLMCFEKVVQMEISWFDKTENSSGAIGARLSTDALAVRGLVGDTLALLVQNTATVIAGLIIGFKASWQLALLILFLLPLVGLNGYLQTKFLTGFNANTKKLYEDASQVASDAVGSIRTVASFCAEEKVLKLYEKKCYGATRAGVRQGLISGTGFGLSMFFLFIVYAISFYAGARLVEAGKITFTEVFRVFLGLSMAALGISQSGTIAPDTGKAKSAAASVFALLDQQSKVDLSDDSGTTLENVKGDIEFRHLSFKYPTRPDVCIFRDLCLVIHAGKTVALVGESGSGKSTVMSLLQRFYDPDSGFITLDGVEIEKLNLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGYATEADIIAAAEFANAHNFISGLQQGYDTTVGERGIQLSGGQKQRVAIARAIVKAPKILLLDEATSALDAASEKVVQEALDRIMVNKTTLVVAHRLSTIRGADLIALVKNGVIAENGKHESLMNIKDGIYASLVALQTRASS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.150
	SRR3591706	second leaf	0.812
	SRR3591707	mature leaf	1.378
	SRR3591708	Shoot apex	1.028
	SRR3591709	Stem	0.361
	SRR3591710	White floral bud	0.261
	SRR3591711	White flower	0.852
	SRR3591712	Green floral bud	1.167
	SRR3591713	Yellow flower	0.663
SRP173429	SRR8316895	Juvenile bud stage	0.447
	SRR8316896	Juvenile bud stage	0.571
	SRR8316897	Juvenile bud stage	0.053
	SRR8316894	Third green stage	0.314
	SRR8316900	Third green stage	0.291
	SRR8316901	Third green stage	0.550
	SRR8316898	Complete white stage	0.023
	SRR8316899	Complete white stage	0.120
	SRR8316903	Complete white stage	0.053
	SRR8316902	Silver flowering stage	0.063
	SRR8316904	Silver flowering stage	0.119
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.243
	SRR8316907	Gold flowering stage	0.053
	SRR8316908	Gold flowering stage	0.080
SRP132670	SRR6706286	Control	0.703
	SRR6706287	Light intensity 50%	0.489
	SRR6706288	Light intensity 20%	0.629
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.797
	CNS0095593	Slightly white alabastrum(diploid) 2	0.374
	CNS0095594	Slightly white alabastrum(diploid) 3	0.531
	CNS0095595	Whole white alabastrum(diploid) 2	0.542
	CNS0095596	Whole white alabastrum(diploid) 3	0.547
	CNS0095597	Whole white alabastrum(diploid) 4	0.261
	CNS0095598	Silvery flower (diploied) 1	0.343
	CNS0095599	Silvery flower (diploied) 2	0.262
	CNS0095600	Silvery flower (diploied) 3	0.152
	CNS0095601	Golden flower (diploid) 1	0.056
	CNS0095602	Golden flower (diploid) 2	0.096
	CNS0095603	Golden flower (diploid) 3	0.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.356
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.284
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.737
	CNS0095610	Silvery flower (tetraploid) 1	0.330
	CNS0095611	Silvery flower (tetraploid) 2	0.162
	CNS0095612	Silvery flower (tetraploid) 3	0.483
	CNS0095613	Golden flower (tetraploid) 1	0.346
	CNS0095614	Golden flower (tetraploid) 2	0.251
	CNS0095615	Golden flower (tetraploid) 3	0.351
CRA001975	CRR073297	Stem 1	0.457
	CRR073298	Stem 2	0.493
	CRR073299	Stem 3	0.094
	CRR073300	Leaf 1	0.484
	CRR073301	Leaf 2	0.601
	CRR073302	Leaf 3	0.148
	CRR073303	Juvenile bud 1	0.117
	CRR073304	Juvenile bud 2	0.040
	CRR073305	Juvenile bud 3	0.129
	CRR073306	Third green 1	0.032
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.030
	CRR073311	Second white 3	0.231
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.245
	CRR073315	Gold flowering 1	0.022
	CRR073316	Gold flowering 2	0.212
	CRR073317	Gold flowering 3	0.046
	CRR073318	Tawny withering 1	0.175
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	0.097