Gene detail

Detail information of GWHGAAZE022313

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010271025.1	0	PREDICTED: ABC transporter B family member 11-like isoform X1 [Nelumbo nucifera]
COG	YP_004584700.1	2E-109	Fe(3+)-transporting ATPase
Swissprot	tr\|O80725\|AB4B_ARATH	0	ABC transporter B family member 4
trEMBL	tr\|M5XIE0\|M5XIE0_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ25271.1}
TAIR10	AT2G47000.1	0	ATP binding cassette subfamily B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70311040	70317603	+
GWHAAZE00000006	mRNA	70311040	70317603	+
GWHAAZE00000006	exon	70311040	70311378	+
GWHAAZE00000006	exon	70312010	70312064	+
GWHAAZE00000006	exon	70312368	70312543	+
GWHAAZE00000006	exon	70312631	70312852	+
GWHAAZE00000006	exon	70312938	70313176	+
GWHAAZE00000006	exon	70313332	70313857	+
GWHAAZE00000006	exon	70314092	70314365	+
GWHAAZE00000006	exon	70314912	70315831	+
GWHAAZE00000006	exon	70316078	70316344	+
GWHAAZE00000006	exon	70316438	70316701	+
GWHAAZE00000006	exon	70316795	70317088	+
GWHAAZE00000006	exon	70317265	70317603	+
GWHAAZE00000006	CDS	70311040	70311378	+
GWHAAZE00000006	CDS	70312010	70312064	+
GWHAAZE00000006	CDS	70312368	70312543	+
GWHAAZE00000006	CDS	70312631	70312852	+
GWHAAZE00000006	CDS	70312938	70313176	+
GWHAAZE00000006	CDS	70313332	70313857	+
GWHAAZE00000006	CDS	70314092	70314365	+
GWHAAZE00000006	CDS	70314912	70315831	+
GWHAAZE00000006	CDS	70316078	70316344	+
GWHAAZE00000006	CDS	70316438	70316701	+
GWHAAZE00000006	CDS	70316795	70317088	+
GWHAAZE00000006	CDS	70317265	70317603	+

Transcript Sequence
>GWHTAAZE022343 ATGGCTGATGAGAGTGGCACAGATGGAGATGAAAATACAGAGAAGACTGCAGCATCAATGGGCCATCTGCAAGTGGAGGAAACAGTGAAAACACCAAAGAAGTCTAGTAGGCAACAAGATTCGGATAACTGCAAAAAGATGGAAGTCATTAAGACAGTTCCGCTTTACAAGTTGTTCTCTTTTGCAGACTCCGTTGACTATGTGTTAATGCTTGTTGGCACAATCGCTGCAATCGGAAATGGGATCTGCATGCCCCTTATGACTCTAATATTTGGGGAGTTAGTTGATACATTTGGAGAGACTGCGGATACCAAAACAATTTTTCATAAAGTTTCCAAGGTATCACTCAAATTTGTGTACTTGGCTCTGGGTTCAGGTGCTGCAGCATTTTCCCAGGTGGTCTTCTGGATGGTCACAGGGGAGAGACAAGCCGCAGAAATTAGAAGCTTATACTTGAAAACCATATTGAGGCAAGATGTTGGATTCTTTGATAAGGACACTAACAGTGGAGAAATTGTTGAGAGGATGTCAGCTGACACTGTTATTATTCAGGATGTGATGGGTGACAAGGTTGGAAAATTCGTGCAGCTGGTAGCTACATTCTTGGGAAGCTTTGTGATAGCTTTTAGCAAGGGATGGCTTCTTACCCTAATCTTGACATCGTCGATTCCTCCTCTTGCCATCTCTGCTGCTGTAATGACCATCCTTATGACAAAACTAACCTCGCAAGAACAAACTGCTTACTCAGTAGCAGCTATTGTGGTTGAACAAACAATTGGATCTATTAGAACTGTTGCATCATTTACAGGGGAGAGGCAAGCTAGAGCTAAATATGACAAATCTCTTACCATAGCTTACAAAGCTGGTGTGCAAGAAGGCTTAGTCACTGGGTTGGGTTCTGGCATATTTATGATGGCAAAGTTTTGCACTTACGCTTTGGCTATATGGGTTGGTACAAGAATGATCTTAGACAAAGATTATACAGGTGGAAGGGTCATAAATGTTATATTCGCTGTGTTCACTAGTGCCTTTGCTCTAGGGCAGGCATCTACATGCTTGAGTGCATTTGCTGCTGGACAAGTTGCAGCATTTAAAATGTTTGATACGATCAGTAGAAAGTCAGAGATAGACCCTTACTACACCCATGGACAGAAACTAGATGATATTACTGGTGCTATTGAACTAAGAGAAGTTTATTTTAGTTATCCAACAAGACCTGATGAGATGATATTTAATGGATTCTCTTTCTCAATACTGAGTGGAACAACGGCAGCATTGGTTGGACAGAGTGGAAGTGGGAAATCAACAGTTATCAGCCTGATAGAGAGGTTCTATGATCCACAAGGAGGTGAAGTTCTTATAGATGGTATCAATCTCAAAGATTTTCAGCTGAGTTGGATCAGAAGCAAAATTGGTCTTGTTAGCCAGGAACCTGTATTGTTCACTTCAAGCATTAAAGATAATATTGCCTACGGGAAGGACATGGCAACCCTCGAAGAGATTAAAGCGGCTGCTGGGCTTGCTAATGCTGCCAAGTTCATAGATAAACTTCCTGAGGGACTTGACACAATGGTTGGTGTGCAAGGAACTCAGCTTTCTGGGGGTCAGAAGCAAAGAATTGCTATAGCTAGAGCAATTCTAAAAGACCCCAGAATTCTACTTCTTGACGAAGCTACAAGTGCTCTTAATGCAGAGTCTGAGACGACGGTACAAGAGGCATTGGACAAGATCATGGTCAACCGAACCACTCTCATTGTAGCCCATCGCTTGAGTACAGTTAAAAATGCTGATATGATTGCTGTCATTCATCAAGGAAAGATTGTTGAAACAGGTTCACGTTCTGAGCTACTACAAGATCCTGAAGGAGCATACTGCCAACTCATCCGATTGCAAGAACATGGCAAAGATTCAGAACTAAATGTTGGAAGCAATCACTATAGGCCAGAGATTACTAGGGACTCTGGAAGACTTTCAAGTATTGGGATTTCCCAATTCCAGTATATGAGCCCGGGATCGCCTGGAATTGGAAACAGTAGCCGGCACTCATTCTCAGTTTCATTTGGTGTACCCACTGGGATCAGCACATTGGCAACTGCAGTATCAGAACCCACAACTCTGGTTTCAGCATCGGCTCAAGCTCCAGCTCCAGCTCCATCACCAATGGAACCAGAAAAAGAAATATCACTTCGCCGCTTGGCCTATCTGAACAAGCCAGAAATCCCAGTTTTACTAGTTGGTTCCATAGCCGCGATTGCTAATGGTGTAATATTACCTATTTTTGGGGTTCTACTTTCTATCATTATCAGAACTTACTATGAGCCATCTCATGACCTTCGTAAGGATTCAAGATACTGGGCGTTAATGTTTGTCGTTCTTGGCTTAGTTACTTTACTTGCAGCGCCATTAAGCACGTACTTTTTTGCTGTTGCGGGATGCAAGTTAATCAAAAGAATTCGACTAATGTGCTTTGAGAAAGTTGTTCAAATGGAAATAAGTTGGTTCGATAAAACAGAGAACTCAAGTGGTGCGATTGGTTCAAGGCTTTCTACCGATGCATTAGCTGTGCGAGGTCTTGTTGGGGACACGCTTGCTTTGGTTGTTCAGAACACTGCAACAGTTATTGCTGGTTTAATTATTGGTTTCAAAGCAAGCTGGCAATTGGCTCTTCTAATTATTTTCTTGCTACCTCTTATGGGACTAAATGGATACCTTCAAACGAAGTTCTTAACTGGGTTTAATGCTAATACAAAGAAATTGTACGAGGATGCAAGTCAAGTTGCTAGTGATGCAGTTGGGAGTATTAGAACAGTAGCTTCTTTTTGTGCTGAAGAGAAGGTATTGAAACTATACGAAAAGAAATGTTATGGTGCTACCAGAGCTGGAGTAAGACAAGGGTTGATTAGCGGTACAGGTTTTGGGCTGTCCATGTTCTTCCTATTTATTGTCTACGCAATTAGTTTTTATGCTGGTGCTCGACTTGTTGAGGCTGGAAAGATAACATTCACTGAAGTTTTTCGTGTATTTTTGGGTCTAAGTATGGCCGCCCTTGGAATTTCTCAATCGGGCTCCCTTGCTCCGAACACTGGTAAAGCAAAGAGTGCTGCTGCTTCAGTCTTTGCTCTTCTTGACCAGCAATCAAAAATAGACTTGAGTGATGACTCTGGTACTACATTGGAGAATGTGAACGGGGATATTGAGTTTCGGCATGTGAGTTTCAAATATCCCACTAGACCGGATGTTTGTATTTTCAGAGATCTCTGCTTGGCCATCCACTCTGGCAAGACTGTTGCTCTGGTTGGAGAAAGTGGGAGCGGAAAGTCAACTGTGATTTCTTTGTTGCAAAGATTTTATAACCCTGATTCCGGCTCTATTACGCTAGATGGAGTTGAAATCGAAAAGCTAAATTTGAAATGGTTAAGGCAGCAAATGGGCTTAGTGAGCCAGGAGCCTGTCTTGTTCAATGACACAATCCGGGCCAACATTGCCTATGGAAAGGAAGGAACCGCAACAGAAGCAGAAATTATAGCTGCAGCAGAGTTAGCAAATGCTCACAATTTCATCAGTGGATTGCAACAGGGGTATGATACAACAGTGGGTGAGAGAGGGATTCAGTTGTCTGGTGGACAGAAGCAGAGGGTGGCAATTGCACGAGCCATTATGAAGGCACCAAAAATATTATTACTAGACGAGGCTACCAGTGCTCTAGATGCTGAATCTGAGAAATTGGTTCAAGAAGCACTAGATCAAGTCGTGGTGAACAAAACCACTGTAGTGGTTGCTCATAGGCTGTCCACAATTAGAGGGGCCGGTTTAATAGCGGTGGTTAAAAATGGAGTGATTGCAGAAAAAGGAAAGCATGAAAGCTTGATGAATATCAAGGATGGTATTTATGCCTCTCTAGTAGCATTACATTAA

Network for GWHGAAZE022313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	70	343	9.00E-63
PF00005.28	ABC_tran	412	560	6.70E-33
PF00664.24	ABC_membrane	744	1012	3.10E-56
PF00005.28	ABC_tran	1085	1233	9.30E-35

Protein Sequence

>GWHPAAZE022329
MADESGTDGDENTEKTAASMGHLQVEETVKTPKKSSRQQDSDNCKKMEVIKTVPLYKLFSFADSVDYVLMLVGTIAAIGNGICMPLMTLIFGELVDTFGETADTKTIFHKVSKVSLKFVYLALGSGAAAFSQVVFWMVTGERQAAEIRSLYLKTILRQDVGFFDKDTNSGEIVERMSADTVIIQDVMGDKVGKFVQLVATFLGSFVIAFSKGWLLTLILTSSIPPLAISAAVMTILMTKLTSQEQTAYSVAAIVVEQTIGSIRTVASFTGERQARAKYDKSLTIAYKAGVQEGLVTGLGSGIFMMAKFCTYALAIWVGTRMILDKDYTGGRVINVIFAVFTSAFALGQASTCLSAFAAGQVAAFKMFDTISRKSEIDPYYTHGQKLDDITGAIELREVYFSYPTRPDEMIFNGFSFSILSGTTAALVGQSGSGKSTVISLIERFYDPQGGEVLIDGINLKDFQLSWIRSKIGLVSQEPVLFTSSIKDNIAYGKDMATLEEIKAAAGLANAAKFIDKLPEGLDTMVGVQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALNAESETTVQEALDKIMVNRTTLIVAHRLSTVKNADMIAVIHQGKIVETGSRSELLQDPEGAYCQLIRLQEHGKDSELNVGSNHYRPEITRDSGRLSSIGISQFQYMSPGSPGIGNSSRHSFSVSFGVPTGISTLATAVSEPTTLVSASAQAPAPAPSPMEPEKEISLRRLAYLNKPEIPVLLVGSIAAIANGVILPIFGVLLSIIIRTYYEPSHDLRKDSRYWALMFVVLGLVTLLAAPLSTYFFAVAGCKLIKRIRLMCFEKVVQMEISWFDKTENSSGAIGSRLSTDALAVRGLVGDTLALVVQNTATVIAGLIIGFKASWQLALLIIFLLPLMGLNGYLQTKFLTGFNANTKKLYEDASQVASDAVGSIRTVASFCAEEKVLKLYEKKCYGATRAGVRQGLISGTGFGLSMFFLFIVYAISFYAGARLVEAGKITFTEVFRVFLGLSMAALGISQSGSLAPNTGKAKSAAASVFALLDQQSKIDLSDDSGTTLENVNGDIEFRHVSFKYPTRPDVCIFRDLCLAIHSGKTVALVGESGSGKSTVISLLQRFYNPDSGSITLDGVEIEKLNLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGTATEAEIIAAAELANAHNFISGLQQGYDTTVGERGIQLSGGQKQRVAIARAIMKAPKILLLDEATSALDAESEKLVQEALDQVVVNKTTVVVAHRLSTIRGAGLIAVVKNGVIAEKGKHESLMNIKDGIYASLVALH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.065
	SRR3591706	second leaf	0.114
	SRR3591707	mature leaf	0.170
	SRR3591708	Shoot apex	0.946
	SRR3591709	Stem	0.192
	SRR3591710	White floral bud	0.008
	SRR3591711	White flower	0.091
	SRR3591712	Green floral bud	0.141
	SRR3591713	Yellow flower	0.031
SRP173429	SRR8316895	Juvenile bud stage	0.208
	SRR8316896	Juvenile bud stage	0.662
	SRR8316897	Juvenile bud stage	0.189
	SRR8316894	Third green stage	0.348
	SRR8316900	Third green stage	0.260
	SRR8316901	Third green stage	0.273
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.191
	SRR8316903	Complete white stage	0.077
	SRR8316902	Silver flowering stage	0.005
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.015
	SRR8316908	Gold flowering stage	0.045
SRP132670	SRR6706286	Control	0.491
	SRR6706287	Light intensity 50%	0.338
	SRR6706288	Light intensity 20%	0.420
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.209
	CNS0095593	Slightly white alabastrum(diploid) 2	0.130
	CNS0095594	Slightly white alabastrum(diploid) 3	0.422
	CNS0095595	Whole white alabastrum(diploid) 2	0.382
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.153
	CNS0095598	Silvery flower (diploied) 1	1.539
	CNS0095599	Silvery flower (diploied) 2	0.720
	CNS0095600	Silvery flower (diploied) 3	0.183
	CNS0095601	Golden flower (diploid) 1	0.556
	CNS0095602	Golden flower (diploid) 2	0.161
	CNS0095603	Golden flower (diploid) 3	0.292
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.224
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.842
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.615
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.564
	CNS0095610	Silvery flower (tetraploid) 1	0.097
	CNS0095611	Silvery flower (tetraploid) 2	0.129
	CNS0095612	Silvery flower (tetraploid) 3	0.176
	CNS0095613	Golden flower (tetraploid) 1	0.005
	CNS0095614	Golden flower (tetraploid) 2	0.019
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	0.553
	CRR073298	Stem 2	1.382
	CRR073299	Stem 3	0.321
	CRR073300	Leaf 1	0.358
	CRR073301	Leaf 2	0.454
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.077
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.117
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.178
	CRR073316	Gold flowering 2	0.059
	CRR073317	Gold flowering 3	0.022
	CRR073318	Tawny withering 1	0.024
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000