Gene detail

Detail information of GWHGAAZE022312

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051282.1	0	ATP binding cassette subfamily B4 isoform 2 [Theobroma cacao]
COG	YP_629357.1	1E-108	ABC transporter permease
Swissprot	tr\|Q9FWX7\|AB11B_ARATH	0	ABC transporter B family member 11
trEMBL	tr\|A0A061DTL8\|A0A061DTL8_THECC	0	ATP binding cassette subfamily B4 isoform 2 {ECO:0000313\|EMBL:EOX95441.1}
TAIR10	AT1G02520.1	0	P-glycoprotein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70268843	70275173	+
GWHAAZE00000006	mRNA	70268843	70275173	+
GWHAAZE00000006	exon	70268843	70269184	+
GWHAAZE00000006	exon	70269838	70269892	+
GWHAAZE00000006	exon	70270598	70270773	+
GWHAAZE00000006	exon	70270874	70271095	+
GWHAAZE00000006	exon	70271384	70271622	+
GWHAAZE00000006	exon	70271796	70272321	+
GWHAAZE00000006	exon	70272415	70272688	+
GWHAAZE00000006	exon	70272819	70273621	+
GWHAAZE00000006	exon	70273703	70273969	+
GWHAAZE00000006	exon	70274050	70274312	+
GWHAAZE00000006	exon	70274361	70274688	+
GWHAAZE00000006	exon	70274766	70275173	+
GWHAAZE00000006	CDS	70268843	70269184	+
GWHAAZE00000006	CDS	70269838	70269892	+
GWHAAZE00000006	CDS	70270598	70270773	+
GWHAAZE00000006	CDS	70270874	70271095	+
GWHAAZE00000006	CDS	70271384	70271622	+
GWHAAZE00000006	CDS	70271796	70272321	+
GWHAAZE00000006	CDS	70272415	70272688	+
GWHAAZE00000006	CDS	70272819	70273621	+
GWHAAZE00000006	CDS	70273703	70273969	+
GWHAAZE00000006	CDS	70274050	70274312	+
GWHAAZE00000006	CDS	70274361	70274688	+
GWHAAZE00000006	CDS	70274766	70275119	+
GWHAAZE00000006	three_prime_UTR	70275120	70275173	+

Transcript Sequence
>GWHTAAZE022342 ATGGATGTAGAGAGTGGTCCTGGTGGAGATACAAATACAGAGCAGATTGCAGCATCAACAACTAGACATTCTCCAGCAAAGTTAACAGTGAAAAGCCCAGAGAAGTCTAGCAACAAAAAAGATTCGTTTAAGAGCAAAAAGAAGGAAGTAACAAATACTGTCCCATTCTACAAGCTCTTCTCCTTTGCCGACTCCACCGACTACGTGCTAATGCTTTTCGGCACAATCACAGCCATTGGAAGTGGGATCTGTATGCCCCTTATGGCCGTGATATTTGGGGAGTTAGTTGATACCTTTGGTGAGACAGTGGATACCAATAAACTTGTTCATAAAGTTTCCAAGGTATCGCTTAAGTTTGTGTACTTGGCTTTGGGTTCTGGCACTGCATCATTTTTGCAGGTTGTTTGCTGGATGATCACAGGAGAGAGACAAGCCGCAAGAATTAGAAGTTTATACTTGAAAACCATATTGAAGCAAGATGTTGGATTTTTCGATAAGGAAACTAACACAGGAGAAATTGTTGAGAGGATGTCAGGGGACACTGTTATTATTCAAGATGCCATGGGCGAGAAGGTAGGGAAATTCATACAGCTGGCAGCTTCATTCTTGGGAGGCATTGTAATAGCTTTCATCAAGGGGTGGCTTCTTTCCCTTGTTTTGATTTCTTCGATTCCTCCTCTCGTTGTCTCTGCTGCTGCCATGACCTTCCTTATGGCAAAATTTATGTCCCGTGGACAAACTGCTTATTTGTTAGCTGCAACTGTGGTTGAACAGACGATTGGATCAATTAGAACTGTTGTATCGTTCACAGGGGAGAGGCAAGCTATTGCTAAATATGACAAGTCTCTTAACGAAGCTTATACATCTGGTGTGCAAGAGGGCTTGGCTGTAGGGTGTGGTGCTGGCTTATTTATGTTTGTCATATTCTCCAGTTACGGACTGGCTGTATGGTTTGGTGCGAGAATGATCTTAAATGGATCATATACAGGTGGAGATGTCATAAATGTCATGATGGCCATGTTAACTGGTTCCTTTTCTTTAGGGCAGGCATTTCCATGCTTGGGAGCATTTACTGCTGGGCAAATTGCAGCATTTAAAATGTTTCAGACTATCCATAGAAAATCAGAAATAGATCCTTACGATGTGAGTGGACAGAAACTGGATGATATTCGTGGTGATATTGAACTAAAAGATGTTTGTTTTAGTTATCCATCTAGACCTCATGAGCAAATTTTTAATGGATTCACTCTCTCAATTCCAAGTGGAACCACAACAGCTTTGGTTGGACAGAGTGGTAGTGGGAAATCAACGGTGATCAACCTGATAGAGAGGTTTTATGATCCGCAAGATGGTGAAGTTCTTATAGATGGGATCAATCTTAAGGGTTTTCAGCTTTGGTGGATTAGGAGCAAAATCGGTCTTGTTAGCCAGGAACCTGTGTTGTTCACTTTAAGCATTAAAGATAATATTGCTTATGCGAATGATGGTGCAACCCTTGAGGAAATTAAAGCTGCTGCTGAGCTCGCCAATGCTGCTAAGTTCATAGATAAACTGCCTCAGGGACTAGACACAATGGTCGGTGTGCATGGAACTCAGCTATCTGGGGGACAAAAGCAGAGAATTGCCATAGCTAGAGCAATTCTAAAAAACCCCAGAATTCTTCTTCTGGACGAAGCTACAAGTGCTCTTGATGCAGAATCTGAGAGGATTGTTCAAGATGCATTGGACAGGGTCATGGTCAACCGGACTACTGTTATTGTAGCCCATCGGTTAAGTACAGTAAAGAGTGCTAATATGATTGCGTTGATTCATCAAGGAAAGATTCTTGAAAAAGGTTCACACTCTGAGCTACTTCAAGATTCGGGGGGAGCGTACTGCCAGCTTATACGGATGCAAGAACTAAGAAAAGAGTCAGAACAACTTGCAGCAAGTGATCCAGAAGGAGCAGAGATTACTATCGTAGACTCACATTCTTTTTGTGTGCCCACCCTGATCAGTCCCATGGGGACACCAGTTGCAGAACCCAGAGCTCCAACTTCAGCACCATTAAAGATGGAGTCTAATGTTTCATTTCGACGCTTGGCCTATCTGAACAAGCCCGAGATCCCAGAGTTACTAGTAGGTTCCATTGCTGCAGTTGCCAACGGTGCAGTATTACCAATTTTTGGCACTATCCTTTCCACTGTCATCAAAACTTTCTATGAGCCAGCTCACAAGCTTCGGAAGGATTCAGAGTTCTGGGCACTAATGTATGTACTCCTTGCAGTGGTATCTGTACTGATGATGCCATTCAGGACTTACTTTTTTGCGGTGGCAGGGTGTAAGTTAATCAGAAGAATCCGAATGATGTGCTTTGAGAAAGTGGTTCACATGGAAATAAGTTGGTTCGATAAAACAGAGAACTCAAGTGGTGCAATCGGTGCTAGGCTTTCTGCAGATGCGTCGTCAGTTCGAGGTCTGGTCGGGGACACACTAGCTTTGTTGGTTGAGAACACTGCAACAGCTATTGCTGGTTTAGTTATTGGTTTCACAGCAAGCTGGCAATTGTCCCTTGTCATCCTTGTTATGCTACCTCTTATAGGATTAAATGAATATGTTCAAATAAAATTCATAAGCGGATTTAGTGGTGATACAAAGAAATTGTATGAGGATGCAAGTCAAGTTGCCAGTGATGCAGTGGGGAGTATTAGAACAGTGGCTTCTTTTAATGCTGAAGAGAAGGTCATGAAGCTTTTCCAAAAGAAATGTGAAGGCCCTTTTAAAGCAGGAATAAGACTAGGGCTTATTAGCGGCGCAGGTTTCGGGTTGTCCATGCTTTTGCTGTTTTTGGTCTATGCTACCAGCTTTTATGCTGGGGCTCGACTTATTCATGCGGGCAAGATAACATTTCCTCAAGTTTTTCAGGTTTTCTATGGTCTCAGTATGGCTGCTATTGGAATTTCTCAATCAGGTTCCCTTGCTCCCGACTCCGGTAAAGCCAAAAGTGCTGCTGCTTCAATCTTCGCTCTTCTGGATCAGAAATCAAACATAAATTCTACCAATGACTCTGGAACGACATTGGAAAATGTGAAGGGGATATTGAGTTTCAGGGTGTCAGTTTCAAGTATCCCACAAGACCCGACATTGAAATTTTCAGAGATCTCTGCTTGGTCATTCCCTCTGGCAAGATTAATAGTGGTGCGTGTGAATCTCATTTTTCAGACCGTTGCCCTGGTTGGAGAAAGTGGGAGCGGAAAATCCACTGTGATTTCTTTGTTGCAAAGATTTTATGACCCTAATTCGGGTCTCATCACATTAGATGGAATTGAGATACAAAAGCTAAAGCTAAAATGGCTAAGACAGCAGATGGGTCTAGTTAGCCAGGAGCCTGTTTTGTTCAATGACACAATCCAAGCCAACATTGCGTATGGAAAGGAAGGCAATGCTGCAGAGGCTGAAATTTTAGCTGCAGCGAAGTTGGCGAATGCCCATAAGTTCATCAGCGGGCTACAACAGGGTTATGAAACAAGAGTAGGGGAGCGAGGGGTCCAATTGTCTGGTGGGCAGAAGCAAAGGGTGGCAATAGCGCGAGCTATATTGAAGGGTCCAAAGATTTTACTACTGGATGAAGCGACCAGTGCTCTCGATGCTGAATCCGAGAAGGTGGTTCAAGATGCATTGGACCGAATTATGGTGGACAGAACCACGGTGGTGGTGGCCCATAGGCTTTCAACGATTAAGGGGGCGGATTTGATAGCAGTGGTTAAAAATGGAGTTATTGCAGAGAAAGGAACACATGAGAGCTTGGTCAATATCAAGGATGGTAATTATGCCTCCTTGGTAGCTCTACACACTAGTGCTTCATTATAGAGAGGCAGTATACTCTTCCTGTTCATTTTGTATCCTAACTTTTCTTGTGCGAAT

Network for GWHGAAZE022312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	71	345	1.40E-58
PF00005.28	ABC_tran	413	561	2.30E-33
PF00664.24	ABC_membrane	706	973	9.30E-57
PF00005.28	ABC_tran	1067	1206	1.30E-31

Protein Sequence

>GWHPAAZE022328
MDVESGPGGDTNTEQIAASTTRHSPAKLTVKSPEKSSNKKDSFKSKKKEVTNTVPFYKLFSFADSTDYVLMLFGTITAIGSGICMPLMAVIFGELVDTFGETVDTNKLVHKVSKVSLKFVYLALGSGTASFLQVVCWMITGERQAARIRSLYLKTILKQDVGFFDKETNTGEIVERMSGDTVIIQDAMGEKVGKFIQLAASFLGGIVIAFIKGWLLSLVLISSIPPLVVSAAAMTFLMAKFMSRGQTAYLLAATVVEQTIGSIRTVVSFTGERQAIAKYDKSLNEAYTSGVQEGLAVGCGAGLFMFVIFSSYGLAVWFGARMILNGSYTGGDVINVMMAMLTGSFSLGQAFPCLGAFTAGQIAAFKMFQTIHRKSEIDPYDVSGQKLDDIRGDIELKDVCFSYPSRPHEQIFNGFTLSIPSGTTTALVGQSGSGKSTVINLIERFYDPQDGEVLIDGINLKGFQLWWIRSKIGLVSQEPVLFTLSIKDNIAYANDGATLEEIKAAAELANAAKFIDKLPQGLDTMVGVHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALDRVMVNRTTVIVAHRLSTVKSANMIALIHQGKILEKGSHSELLQDSGGAYCQLIRMQELRKESEQLAASDPEGAEITIVDSHSFCVPTLISPMGTPVAEPRAPTSAPLKMESNVSFRRLAYLNKPEIPELLVGSIAAVANGAVLPIFGTILSTVIKTFYEPAHKLRKDSEFWALMYVLLAVVSVLMMPFRTYFFAVAGCKLIRRIRMMCFEKVVHMEISWFDKTENSSGAIGARLSADASSVRGLVGDTLALLVENTATAIAGLVIGFTASWQLSLVILVMLPLIGLNEYVQIKFISGFSGDTKKLYEDASQVASDAVGSIRTVASFNAEEKVMKLFQKKCEGPFKAGIRLGLISGAGFGLSMLLLFLVYATSFYAGARLIHAGKITFPQVFQVFYGLSMAAIGISQSGSLAPDSGKAKSAAASIFALLDQKSNINSTNDSGTTLENVKGILSFRVSVSSIPQDPTLKFSEISAWSFPLARLIVVRVNLIFQTVALVGESGSGKSTVISLLQRFYDPNSGLITLDGIEIQKLKLKWLRQQMGLVSQEPVLFNDTIQANIAYGKEGNAAEAEILAAAKLANAHKFISGLQQGYETRVGERGVQLSGGQKQRVAIARAILKGPKILLLDEATSALDAESEKVVQDALDRIMVDRTTVVVAHRLSTIKGADLIAVVKNGVIAEKGTHESLVNIKDGNYASLVALHTSASL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.169
	SRR3591709	Stem	0.065
	SRR3591710	White floral bud	0.023
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.386
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.579
	SRR8316896	Juvenile bud stage	1.314
	SRR8316897	Juvenile bud stage	0.331
	SRR8316894	Third green stage	0.616
	SRR8316900	Third green stage	0.671
	SRR8316901	Third green stage	0.698
	SRR8316898	Complete white stage	0.022
	SRR8316899	Complete white stage	0.167
	SRR8316903	Complete white stage	0.026
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.794
	SRR6706287	Light intensity 50%	0.618
	SRR6706288	Light intensity 20%	0.603
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.926
	CNS0095593	Slightly white alabastrum(diploid) 2	1.487
	CNS0095594	Slightly white alabastrum(diploid) 3	3.926
	CNS0095595	Whole white alabastrum(diploid) 2	0.678
	CNS0095596	Whole white alabastrum(diploid) 3	0.933
	CNS0095597	Whole white alabastrum(diploid) 4	0.753
	CNS0095598	Silvery flower (diploied) 1	0.266
	CNS0095599	Silvery flower (diploied) 2	0.266
	CNS0095600	Silvery flower (diploied) 3	0.091
	CNS0095601	Golden flower (diploid) 1	0.236
	CNS0095602	Golden flower (diploid) 2	0.127
	CNS0095603	Golden flower (diploid) 3	0.198
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.409
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.801
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.949
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.531
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.298
	CRR073298	Stem 2	1.398
	CRR073299	Stem 3	0.818
	CRR073300	Leaf 1	0.282
	CRR073301	Leaf 2	0.703
	CRR073302	Leaf 3	0.258
	CRR073303	Juvenile bud 1	0.177
	CRR073304	Juvenile bud 2	0.110
	CRR073305	Juvenile bud 3	0.038
	CRR073306	Third green 1	0.010
	CRR073307	Third green 2	0.018
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.029
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.025
	CRR073320	Tawny withering 3	0.147