Gene detail

Detail information of GWHGAAZE022311

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010271025.1	0	PREDICTED: ABC transporter B family member 11-like isoform X1 [Nelumbo nucifera]
COG	YP_629357.1	9E-109	ABC transporter permease
Swissprot	tr\|Q9FWX7\|AB11B_ARATH	0	ABC transporter B family member 11
trEMBL	tr\|A0A061DZI3\|A0A061DZI3_THECC	0	ATP binding cassette subfamily B4 isoform 1 {ECO:0000313\|EMBL:EOX95438.1}
TAIR10	AT1G02520.1	0	P-glycoprotein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70236389	70254273	+
GWHAAZE00000006	mRNA	70236389	70254273	+
GWHAAZE00000006	exon	70236389	70236764	+
GWHAAZE00000006	exon	70237250	70237304	+
GWHAAZE00000006	exon	70237395	70237570	+
GWHAAZE00000006	exon	70237667	70237888	+
GWHAAZE00000006	exon	70237978	70238216	+
GWHAAZE00000006	exon	70238399	70238924	+
GWHAAZE00000006	exon	70239707	70239980	+
GWHAAZE00000006	exon	70250055	70250866	+
GWHAAZE00000006	exon	70251111	70251377	+
GWHAAZE00000006	exon	70251497	70251760	+
GWHAAZE00000006	exon	70252852	70253145	+
GWHAAZE00000006	exon	70253920	70254273	+
GWHAAZE00000006	five_prime_UTR	70236389	70236428	+
GWHAAZE00000006	CDS	70236429	70236764	+
GWHAAZE00000006	CDS	70237250	70237304	+
GWHAAZE00000006	CDS	70237395	70237570	+
GWHAAZE00000006	CDS	70237667	70237888	+
GWHAAZE00000006	CDS	70237978	70238216	+
GWHAAZE00000006	CDS	70238399	70238924	+
GWHAAZE00000006	CDS	70239707	70239980	+
GWHAAZE00000006	CDS	70250055	70250866	+
GWHAAZE00000006	CDS	70251111	70251377	+
GWHAAZE00000006	CDS	70251497	70251760	+
GWHAAZE00000006	CDS	70252852	70253145	+
GWHAAZE00000006	CDS	70253920	70254273	+

Transcript Sequence
>GWHTAAZE022341 GCGGTAGTTAATATTGGATTACAAAGTCTGCATTTTACAAATGGCTGAGAATGGTCTTAATGGAGATATAAGCTCTGAGCAAACAACTGTATCAACTCGCCAAGAGCCAGTGGTGGATTTGGTGAAATCCCCAGAGAATTCTAGCAGCCAACAAGATTCAGACAAAAGCAAAAATAATGAAGTAACTAACACAGTTCCATTTTACAAGCTGTTCTCCTTTGCTGACTCCACAGACTATGTATTAATGCTTATTGGCACAGTTGCTTCCATCGGCCATGGGTTGTGCAATCCCCTTATGACTGTGATATTGGGGGAGATAGTTAACACCTTTGGAGAGTCTGTGGATGCCAATAAACTTGTTCAAGGAGTTTCCGAGGTATCCATCAAATATGTATACTTGGCTCTGGGGTCAGGTGTTTCAGCATTTTCCCAACTGGTTTGCTGGATTGTCACGGCGGAGAGACAGACTGCGCGAATTAGAAGTTTGTACTTGAAAGCTATATTGAGGCAAGATGTTGGATTTTTCGATACGGAAATTAACACTGGAGAAATTGTTGAGAGGATGTCAGTCGATGCTGTCATCATTCAAAATGCCATGGGCGAGAAGGCGGGAAGATTCATACAGGTGGCAGCTGGATTCTTTGGAGGGTTTGTGATAGCTTATATGAAGGGGTGGCTTCTTACTCTCGTCTTGATGTCTTCAACTCCTGCTCTTGCCATCTCTAGTGGTGCCATGACAATCCTCATGGCGAAGTTTATATCCCGCGGACAAACTGCGTATTCAGCAGCTGCAATTGTGGTTGAACAGACAATTGGATCAATTAGAACTGTGGCATCCTTCACAGGGGAGAGACAAGCTATTGCTGAATATGACAAGTCTCTTAACAAAGCTTACAGAGCTGGTGTGAATGAGGGCTTGGCTGCGGGGTTGGGTTCTGGCATATATACATGCTTCCTATTCTTCAGTTATGCTCTGGCTGCATGGTTTGGTGCGAGAATGATAATAAACAAATCATATACAGGAGGAGATGTCATAAATGTCATCCTGGCTGTATTGACTGCCTCTTTTTCTTTAGGGCAGGTTTCTCCATGCTTGAGTGCAATTATTGCTGGACAAGTGGCAGCTTTTAAAATGTTTAAGACAATCAATAGAAAGTCAGGCATAGATCCTTATGACATGAGCGGACAGAAATTGGATAATATTCATGGCGATATTGAACTGAGGAATGTCTATTTTAGTTATCCATCAAGACCGGATGAGCAAATATTCAATGGATTCTCTCTCTCAATTCCAAGTGGAACAACCACAGCTTTGGTAGGACAGAGTGGAAGTGGGAAGTCGACAGTGATCAGCTTGATAGAGAGGTTTTATGATCCACAAGAAGGGGATGTTCTTATAGATGGCATCAACCTTAAAGATTTTCAGCTTTCGTGGATCAGAGGCAAAATGGGGCTCGTTAGCCAGGAACCTGTACTGTTCGCTTTGAGCATTAAAGATAATATTGCCTATGGGAAGGATGGTGCAACAGTTGAAGAAATTAAAGCTGTTGCTGAGCTTGCCAATGCTACCAAATTCATTGACAAACTGCCTCAGGGACTAGACACAATGGTTGGTGTGGCTGGAATTCAGCTATCAGGGGGCCAAAAGCAGAGAATTGCCATAGCTAGAGCAATTTTGAAAGACCCCAGAATTCTACTTCTGGATGAAGCTACAAGCGCTCTTGATGCAGAGTCTGAGAGGATTGTTCAAGAAGCATTGGAGAGGGTCATGGTCAACCGAACAACTGTCATTGTTGCCCATCGCTTGACTACAGTAAAGAATGCTAATATGATCGCAGTCATTCATCATGGCCATATTGTTGAAAAAGGTTCACACTCCGAGCTACTACAAAATTCTGAAGGAGCATACTGCCAACTTATACGTTTGCAAGAACTAAGTAAAGATTCTGAACAAAATTCAGTAAGTGACCAGGACACACCAGAGATTCCTAGGGTGGACTTTGGAGGACATTCAAGCATGCAAGTCTCCTCTGCAATCAGTACTGTGGAGGCAGCACTTGCAGAACCCAGAGCTCCTCCTTCAGCACAATCACATAAGAAAATGAAAGTGTCACTTCAACACTTGGCCTATCTGAACAAGCCAGAGATCCCGGTATTACTAGTAGGTTCCATAGCTGCAGTGGCCAATGGTTTAATATTACCAATTTTTGGACTTATTCTCTCTATGGTCATTAAAACTTTCTATGAACCACCTCATGAGCTTCGGAAGGATTCAGAATTTTGGGCATTAATGTTTGCTGTTCTTGGTTTGGCTACTGCACTATTAATGCCATTGAGGACATACTTTTTTGCTGTAGCAGGGTGTAAGTTAATCAAAAGAATTAGATTGATGTGCTTCGAGAAAGTGGTTCAGATGGACATAAGTTGGTTTGACAAAACAGAGAACTCAAGTGGTGCAATCGGTGCTAGGCTTTCTGCAGATGCATCATCTGTGCGAGGTCTGGTTGGGGACACACTTGCTTTGTTGGTTCAGAACACTGCAACCGCTATTGCTGGTTTAGTTATTGGTTTCCAAGCAAGCTGGCAATTGTCTCTTATTACCCTTGTCTTGCTACCTCTAATAGGACTAAATGGATATGTTCAAATAAAATTCATAAGCGGATTTAGTGCTGATACAAAGAAATTGTATGAGGATGCAAGCCAAGTTGCTAGCGATGCAGTTGGAAGTATTAGAACAGTGGCTTCTTTTAATTCTGAAGAGAAGGTTACGAAGCTATACCAAAAGAAATGTGAAGTCCCTTTGAAAGCAGGAATAAAACAAGGACTTATAAGTGGGACTGGTTGGGGTTTGTCCATGCTTTTGCTATTTTTGGTCTACGCAACCATCTTTTATGCTGGAGCTCGACTTGTCAAGGCTGGTGACATAACATTCCCTCAAGTTTTTCGGGTTTTCTATGGTTTAAGTATGGCTGCAATTGGAATTTCTCAATCAGGTGCCTTTGCTCCAGATACCGGGAAGGCCAAGAGTGCAGCTGCTTCAATCTTTGTTCTTCTTGACCAGAAATCAAAATTAGACTCTAGTGATGATTCTGGAACAATCTTGGAAGATGTAAAGGGAGATATTGAGTTTCTTGGTGTTGACTTCAAGTACCCCACTAGACCCAACATTCAAATATTTAGAGATCTCTGCTTGGTCATTCCCTCTGGCAAGGTAGTTGCTCTGGTTGGAGAAAGTGGGTGCGGGAAATCAACTGTGATTTCTTTGTTGCAAAGATTTTATGAACCTGATTCAGGTCGCATCACCCTAGATGGAATCGAAATTCAGATGCTAAAGTTGAAGTGGTTAAGACAGCAGATGGGTCTAGTTAGCCAGGAGCCTGTTTTGTTCAACGACACAATCCGAGCAAACATTGCTTATGGGAAGGAAGGCAATGCCACAGAGGCAGAAATTTTAGCTGCAGCAGAGTTTGCAAATGCTCACAAGTTCATCAGTGGGTTACAACAGGGCTATGATACAAGAGTGGGAGAGCGAGGGATTCAATTATCTGGTGGACAAAAGCAACGCGTGGCAATTGCACGAGCCATTCTGAAGGCTCCAAAGATATTACTACTAGATGAGGCCACCAGTGCCCTTGATGCTGAATCTGAGAGAGTGGTTCAAGATGCATTAGATCGAGTCATGATAGACAGAACAACGGTGGTGGCGGCCCATAGGCTGTCAACAATTAAGGGCGCGGATTTAATTGCGGTGGTTAAAAATGGAGCCATTGCTGAGAAAGGAATGCATGAGAGCTTGATCAACTTCAAGAATGGTCTTTATGCATCCCTGGTAGCTCTACACACTACTAGTTCATCCTAG

Network for GWHGAAZE022311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	69	342	4.00E-57
PF00005.28	ABC_tran	411	559	1.50E-32
PF00664.24	ABC_membrane	707	973	2.10E-59
PF00005.28	ABC_tran	1049	1196	4.90E-35

Protein Sequence

>GWHPAAZE022327
MAENGLNGDISSEQTTVSTRQEPVVDLVKSPENSSSQQDSDKSKNNEVTNTVPFYKLFSFADSTDYVLMLIGTVASIGHGLCNPLMTVILGEIVNTFGESVDANKLVQGVSEVSIKYVYLALGSGVSAFSQLVCWIVTAERQTARIRSLYLKAILRQDVGFFDTEINTGEIVERMSVDAVIIQNAMGEKAGRFIQVAAGFFGGFVIAYMKGWLLTLVLMSSTPALAISSGAMTILMAKFISRGQTAYSAAAIVVEQTIGSIRTVASFTGERQAIAEYDKSLNKAYRAGVNEGLAAGLGSGIYTCFLFFSYALAAWFGARMIINKSYTGGDVINVILAVLTASFSLGQVSPCLSAIIAGQVAAFKMFKTINRKSGIDPYDMSGQKLDNIHGDIELRNVYFSYPSRPDEQIFNGFSLSIPSGTTTALVGQSGSGKSTVISLIERFYDPQEGDVLIDGINLKDFQLSWIRGKMGLVSQEPVLFALSIKDNIAYGKDGATVEEIKAVAELANATKFIDKLPQGLDTMVGVAGIQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALERVMVNRTTVIVAHRLTTVKNANMIAVIHHGHIVEKGSHSELLQNSEGAYCQLIRLQELSKDSEQNSVSDQDTPEIPRVDFGGHSSMQVSSAISTVEAALAEPRAPPSAQSHKKMKVSLQHLAYLNKPEIPVLLVGSIAAVANGLILPIFGLILSMVIKTFYEPPHELRKDSEFWALMFAVLGLATALLMPLRTYFFAVAGCKLIKRIRLMCFEKVVQMDISWFDKTENSSGAIGARLSADASSVRGLVGDTLALLVQNTATAIAGLVIGFQASWQLSLITLVLLPLIGLNGYVQIKFISGFSADTKKLYEDASQVASDAVGSIRTVASFNSEEKVTKLYQKKCEVPLKAGIKQGLISGTGWGLSMLLLFLVYATIFYAGARLVKAGDITFPQVFRVFYGLSMAAIGISQSGAFAPDTGKAKSAAASIFVLLDQKSKLDSSDDSGTILEDVKGDIEFLGVDFKYPTRPNIQIFRDLCLVIPSGKVVALVGESGCGKSTVISLLQRFYEPDSGRITLDGIEIQMLKLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGNATEAEILAAAEFANAHKFISGLQQGYDTRVGERGIQLSGGQKQRVAIARAILKAPKILLLDEATSALDAESERVVQDALDRVMIDRTTVVAAHRLSTIKGADLIAVVKNGAIAEKGMHESLINFKNGLYASLVALHTTSSS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.756
	SRR3591706	second leaf	0.690
	SRR3591707	mature leaf	0.544
	SRR3591708	Shoot apex	1.589
	SRR3591709	Stem	1.069
	SRR3591710	White floral bud	0.556
	SRR3591711	White flower	0.880
	SRR3591712	Green floral bud	0.489
	SRR3591713	Yellow flower	0.499
SRP173429	SRR8316895	Juvenile bud stage	1.171
	SRR8316896	Juvenile bud stage	1.536
	SRR8316897	Juvenile bud stage	0.437
	SRR8316894	Third green stage	0.672
	SRR8316900	Third green stage	0.940
	SRR8316901	Third green stage	1.128
	SRR8316898	Complete white stage	0.328
	SRR8316899	Complete white stage	1.114
	SRR8316903	Complete white stage	0.515
	SRR8316902	Silver flowering stage	0.280
	SRR8316904	Silver flowering stage	0.379
	SRR8316905	Silver flowering stage	0.157
	SRR8316906	Gold flowering stage	0.870
	SRR8316907	Gold flowering stage	0.532
	SRR8316908	Gold flowering stage	0.203
SRP132670	SRR6706286	Control	0.754
	SRR6706287	Light intensity 50%	0.844
	SRR6706288	Light intensity 20%	0.809
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.410
	CNS0095593	Slightly white alabastrum(diploid) 2	1.183
	CNS0095594	Slightly white alabastrum(diploid) 3	0.798
	CNS0095595	Whole white alabastrum(diploid) 2	0.836
	CNS0095596	Whole white alabastrum(diploid) 3	0.596
	CNS0095597	Whole white alabastrum(diploid) 4	0.487
	CNS0095598	Silvery flower (diploied) 1	1.402
	CNS0095599	Silvery flower (diploied) 2	1.667
	CNS0095600	Silvery flower (diploied) 3	0.911
	CNS0095601	Golden flower (diploid) 1	1.105
	CNS0095602	Golden flower (diploid) 2	1.146
	CNS0095603	Golden flower (diploid) 3	1.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.672
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.321
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.751
	CNS0095610	Silvery flower (tetraploid) 1	1.137
	CNS0095611	Silvery flower (tetraploid) 2	0.791
	CNS0095612	Silvery flower (tetraploid) 3	0.898
	CNS0095613	Golden flower (tetraploid) 1	0.997
	CNS0095614	Golden flower (tetraploid) 2	0.682
	CNS0095615	Golden flower (tetraploid) 3	0.670
CRA001975	CRR073297	Stem 1	0.956
	CRR073298	Stem 2	0.969
	CRR073299	Stem 3	0.443
	CRR073300	Leaf 1	0.774
	CRR073301	Leaf 2	0.751
	CRR073302	Leaf 3	0.255
	CRR073303	Juvenile bud 1	0.189
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.157
	CRR073306	Third green 1	0.011
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.126
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.047
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.098
	CRR073313	Silver flowering 2	0.151
	CRR073314	Silver flowering 3	0.045
	CRR073315	Gold flowering 1	0.672
	CRR073316	Gold flowering 2	0.611
	CRR073317	Gold flowering 3	0.147
	CRR073318	Tawny withering 1	0.487
	CRR073319	Tawny withering 2	0.142
	CRR073320	Tawny withering 3	0.171