Detail information of GWHGAAZE022303


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268657.10PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera]
COGYP_003225867.19E-7250S ribosomal protein L3
Swissprottr|Q9LRN8|RK3B_ARATH6E-17150S ribosomal protein L3-2, chloroplastic (Precursor)
trEMBLtr|D7T692|D7T692_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26013.3}
TAIR10AT3G17465.17E-127ribosomal protein L3 plastid

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7010703570114066-
GWHAAZE00000006mRNA7010703570114066-
GWHAAZE00000006exon7010703570107682-
GWHAAZE00000006exon7010818270108295-
GWHAAZE00000006exon7011219170112295-
GWHAAZE00000006exon7011304870113257-
GWHAAZE00000006exon7011369170114066-
GWHAAZE00000006five_prime_UTR7011403370114066-
GWHAAZE00000006CDS7011369170114032-
GWHAAZE00000006CDS7011304870113257-
GWHAAZE00000006CDS7011219170112295-
GWHAAZE00000006CDS7010818270108295-
GWHAAZE00000006CDS7010750970107682-
GWHAAZE00000006three_prime_UTR7010703570107508-
Transcript Sequence

Network for GWHGAAZE022303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.23Ribosomal_L31642475.10E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02906RP-L3, MRPL3, rplC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.974
SRR3591706second leaf4.504
SRR3591707mature leaf3.357
SRR3591708Shoot apex23.049
SRR3591709Stem8.316
SRR3591710White floral bud10.388
SRR3591711White flower16.926
SRR3591712Green floral bud25.351
SRR3591713Yellow flower12.389
SRP173429 SRR8316895Juvenile bud stage 16.695
SRR8316896Juvenile bud stage 21.242
SRR8316897Juvenile bud stage 10.888
SRR8316894Third green stage 8.530
SRR8316900Third green stage 25.170
SRR8316901Third green stage 20.442
SRR8316898Complete white stage 2.616
SRR8316899Complete white stage 18.194
SRR8316903Complete white stage 3.738
SRR8316902Silver flowering stage4.410
SRR8316904Silver flowering stage3.695
SRR8316905Silver flowering stage1.866
SRR8316906Gold flowering stage 6.753
SRR8316907Gold flowering stage 6.246
SRR8316908Gold flowering stage 7.954
SRP132670SRR6706286Control23.808
SRR6706287Light intensity 50%23.481
SRR6706288Light intensity 20%24.163
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.074
CNS0095593Slightly white alabastrum(diploid) 230.527
CNS0095594Slightly white alabastrum(diploid) 328.191
CNS0095595Whole white alabastrum(diploid) 218.570
CNS0095596Whole white alabastrum(diploid) 321.467
CNS0095597Whole white alabastrum(diploid) 413.647
CNS0095598Silvery flower (diploied) 113.154
CNS0095599Silvery flower (diploied) 210.415
CNS0095600Silvery flower (diploied) 38.297
CNS0095601Golden flower (diploid) 18.729
CNS0095602Golden flower (diploid) 27.311
CNS0095603Golden flower (diploid) 37.011
CNS0095604Slightly white alabastrum(tetraploid) 125.281
CNS0095605Slightly white alabastrum(tetraploid) 224.947
CNS0095606Slightly white alabastrum(tetraploid) 335.404
CNS0095607Whole white alabastrum(tetraploid) 112.263
CNS0095608Whole white alabastrum(tetraploid) 212.727
CNS0095609Whole white alabastrum(tetraploid) 329.545
CNS0095610Silvery flower (tetraploid) 115.749
CNS0095611Silvery flower (tetraploid) 211.203
CNS0095612Silvery flower (tetraploid) 36.785
CNS0095613Golden flower (tetraploid) 16.352
CNS0095614Golden flower (tetraploid) 212.394
CNS0095615Golden flower (tetraploid) 32.225
CRA001975CRR073297Stem 119.612
CRR073298Stem 216.447
CRR073299Stem 318.023
CRR073300Leaf 114.251
CRR073301Leaf 213.832
CRR073302Leaf 318.288
CRR073303Juvenile bud 115.301
CRR073304Juvenile bud 29.260
CRR073305Juvenile bud 39.756
CRR073306Third green 10.730
CRR073307Third green 21.885
CRR073308Third green 31.441
CRR073309Second white 12.951
CRR073310Second white 21.541
CRR073311Second white 31.521
CRR073312Silver flowering 10.782
CRR073313Silver flowering 21.359
CRR073314Silver flowering 31.273
CRR073315Gold flowering 14.771
CRR073316Gold flowering 26.273
CRR073317Gold flowering 33.288
CRR073318Tawny withering 113.123
CRR073319Tawny withering 29.503
CRR073320Tawny withering 317.210