Detail information of GWHGAAZE022296


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267270.10PREDICTED: probable receptor-like protein kinase At5g18500 [Vitis vinifera]
COGYP_007201433.13E-29protein kinase family protein
Swissprottr|Q8LEB6|Y5185_ARATH0Probable receptor-like protein kinase At5g18500
trEMBLtr|D7T685|D7T685_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26006.3}
TAIR10AT1G56720.31E-152Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7001778270020460-
GWHAAZE00000006mRNA7001778270020460-
GWHAAZE00000006exon7001778270017871-
GWHAAZE00000006exon7001806670018278-
GWHAAZE00000006exon7001882270018951-
GWHAAZE00000006exon7001907570019245-
GWHAAZE00000006exon7001933270019454-
GWHAAZE00000006exon7001963970019743-
GWHAAZE00000006exon7001983570020460-
GWHAAZE00000006CDS7001983570020460-
GWHAAZE00000006CDS7001963970019743-
GWHAAZE00000006CDS7001933270019454-
GWHAAZE00000006CDS7001907570019245-
GWHAAZE00000006CDS7001882270018951-
GWHAAZE00000006CDS7001806670018278-
GWHAAZE00000006CDS7001778270017871-
Transcript Sequence

Network for GWHGAAZE022296

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1764443.90E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-V

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.326
SRR3591706second leaf7.516
SRR3591707mature leaf1.924
SRR3591708Shoot apex9.378
SRR3591709Stem11.595
SRR3591710White floral bud48.313
SRR3591711White flower22.253
SRR3591712Green floral bud18.150
SRR3591713Yellow flower7.484
SRP173429 SRR8316895Juvenile bud stage 19.444
SRR8316896Juvenile bud stage 13.713
SRR8316897Juvenile bud stage 8.262
SRR8316894Third green stage 7.820
SRR8316900Third green stage 9.486
SRR8316901Third green stage 13.194
SRR8316898Complete white stage 9.980
SRR8316899Complete white stage 19.386
SRR8316903Complete white stage 19.078
SRR8316902Silver flowering stage4.869
SRR8316904Silver flowering stage7.897
SRR8316905Silver flowering stage3.500
SRR8316906Gold flowering stage 7.254
SRR8316907Gold flowering stage 5.337
SRR8316908Gold flowering stage 10.688
SRP132670SRR6706286Control7.503
SRR6706287Light intensity 50%10.706
SRR6706288Light intensity 20%10.171
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.347
CNS0095593Slightly white alabastrum(diploid) 219.402
CNS0095594Slightly white alabastrum(diploid) 314.456
CNS0095595Whole white alabastrum(diploid) 213.583
CNS0095596Whole white alabastrum(diploid) 38.632
CNS0095597Whole white alabastrum(diploid) 47.562
CNS0095598Silvery flower (diploied) 118.292
CNS0095599Silvery flower (diploied) 212.821
CNS0095600Silvery flower (diploied) 311.018
CNS0095601Golden flower (diploid) 18.907
CNS0095602Golden flower (diploid) 27.779
CNS0095603Golden flower (diploid) 38.049
CNS0095604Slightly white alabastrum(tetraploid) 137.837
CNS0095605Slightly white alabastrum(tetraploid) 225.760
CNS0095606Slightly white alabastrum(tetraploid) 377.044
CNS0095607Whole white alabastrum(tetraploid) 131.464
CNS0095608Whole white alabastrum(tetraploid) 28.419
CNS0095609Whole white alabastrum(tetraploid) 312.586
CNS0095610Silvery flower (tetraploid) 18.157
CNS0095611Silvery flower (tetraploid) 216.580
CNS0095612Silvery flower (tetraploid) 317.147
CNS0095613Golden flower (tetraploid) 13.068
CNS0095614Golden flower (tetraploid) 28.483
CNS0095615Golden flower (tetraploid) 31.833
CRA001975CRR073297Stem 130.536
CRR073298Stem 230.008
CRR073299Stem 320.828
CRR073300Leaf 123.849
CRR073301Leaf 222.350
CRR073302Leaf 321.921
CRR073303Juvenile bud 112.569
CRR073304Juvenile bud 219.809
CRR073305Juvenile bud 316.765
CRR073306Third green 117.043
CRR073307Third green 220.738
CRR073308Third green 322.128
CRR073309Second white 14.273
CRR073310Second white 25.126
CRR073311Second white 32.997
CRR073312Silver flowering 12.812
CRR073313Silver flowering 21.191
CRR073314Silver flowering 30.662
CRR073315Gold flowering 10.656
CRR073316Gold flowering 21.162
CRR073317Gold flowering 31.066
CRR073318Tawny withering 14.919
CRR073319Tawny withering 25.221
CRR073320Tawny withering 36.402