Gene detail

Detail information of GWHGAAZE022270

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649491.1	0	PREDICTED: beta-glucosidase-like SFR2, chloroplastic isoform X2 [Vitis vinifera]
COG	YP_002250240.1	6E-53	beta-glucosidase A
Swissprot	tr\|Q8L6H7\|SFR2_ORYSJ	0	Beta-glucosidase-like SFR2, chloroplastic
trEMBL	tr\|F6H703\|F6H703_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47950.1}
TAIR10	AT3G06510.1	0	Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69481683	69488338	-
GWHAAZE00000006	mRNA	69481683	69488338	-
GWHAAZE00000006	exon	69488158	69488338	-
GWHAAZE00000006	exon	69486539	69486893	-
GWHAAZE00000006	exon	69485606	69485744	-
GWHAAZE00000006	exon	69485224	69485390	-
GWHAAZE00000006	exon	69484834	69485055	-
GWHAAZE00000006	exon	69484282	69484450	-
GWHAAZE00000006	exon	69483955	69484188	-
GWHAAZE00000006	exon	69483668	69483817	-
GWHAAZE00000006	exon	69483394	69483523	-
GWHAAZE00000006	exon	69481683	69481897	-
GWHAAZE00000006	CDS	69488158	69488338	-
GWHAAZE00000006	CDS	69486539	69486893	-
GWHAAZE00000006	CDS	69485606	69485744	-
GWHAAZE00000006	CDS	69485224	69485390	-
GWHAAZE00000006	CDS	69484834	69485055	-
GWHAAZE00000006	CDS	69484282	69484450	-
GWHAAZE00000006	CDS	69483955	69484188	-
GWHAAZE00000006	CDS	69483668	69483817	-
GWHAAZE00000006	CDS	69483394	69483523	-
GWHAAZE00000006	CDS	69481683	69481897	-

Transcript Sequence
>GWHTAAZE022300 ATGACGTTTGTGGCGCTGTTTGTGTCGGCGACTAAGCTTGCCGGAATATTAGCGACGGTGACCGTTGCCGCGAATGCCTTCTCTTTCTCTCGTTACCGTAAGAAGAATCTGAAACCCTTCCTCTCTCCAATCGACGAGTCTTCCGACACTCTAGCCCTCTTCAACGTCAATCCCTCCGATGAAGGGGAGAAAGAATTCTTTTTTGGATTGGCAACAGCACCAGCACATGTTGAAGACAGGCTTGATGATGCCTGGCTTCAGTTTGCAGAAAATGATCCATGTGACAAATCGGATATACAGCAAGAACCCCAAACCGTGGACGCAATTTTAGGTTCTGCTACTGGCGATGGTGGGTCCCAGCCGGCTTCATTATCTGTGAAGGAAGAAGCTGGTAAGGCCATAAAGAGAAAGAAACAACTTAAGATAGCCATGGAAGCGAAAATTAGAGGATATGTGAAGTATGTTGAAGAGGATGAACCCACACCAACTGAGGATTGTCATCACAATGTTGCTGCATGGCATAATGTTCCACACCCGGAGGAGAGGCTAAGGTTTTGGTCTGATCCTGATACCGAACTGAAACTAGCTAAAAATACTGGCGTCGGTGTCTTCCGAATGGGAGTAGATTGGACAAGGATCATGCCTGAGGAACCGATTGGTGGGCTTAAAGGAACTGTCAATTATGCAGCAATGGAACGATATAAATGGATCATCAATAGGGTTCGCTCATATGGTATGAAAGTGATGCTGACTCTGTTCCATCATTCACTACCGCCGTGGGCTGGAGAGTATGGAGGATGGAAGTTAGAGAAAACAGTTGATTATTTCATGGATTTTACCAGGATTGTTGTTGACAGTGTAGCTGATCTGGTAGATTACTGGGTAACATTTAATGAACCTCATGTATTTTGTATGCTCACTTATTGTGCTGGTGCTTGGCCTGGTGGTAATCCCGATATGCTGGAGGTAGCCACTTCTGCTTTACCTACTGGTGTCTTCAATCAGACCATGCACTGGATGGCTATTGCACACTCCAAGGCTTATGACTATATCCACAAACAAAGCACGTGTTCAAAATCAAATGTTGGAGTAGCACATCATGTCTCATTCATGCGCCCATATGGACTATTCGATGTTGCTGCTGTGTCACTCGCTAATTCCTTGACACTATTTCCATATCTTGATAGCATTTCTGACAAGATGGATTTTATAGGACTAAATTACTACGGACAGGAAGTTATATCTGGGGCCGGACTGAAGCTAGTAGAAACTGATGAATATAGTGAATCTGGACGTGGGGTTTATCCTGATGGCTTGTACCGCATGCTGCTTCAGTTCCATGAACGATACAAGCATCTAAATGTACCCTTTATTATTACTGAAAATGGTGTTTCTGATGAGACAGATTTGATCCGACGGCCATATTTCTTGGAACATCTACTTGCAATTTATGCAGCAATGATCAAGGGTGTCCCCGTACTCGGTTACCTGTTTTGGACCATCTCTGATAACTGGGAGTGGGCTGATGGTTATGGTCCTAAGTTTGGACTTGTAGCAGTTGACCGTTCCAATAATCTTGCTCGTATTCCTCGTCCTTCATATAATTTGTTTACAAAGGTGGCAACCTCGGGTAAAGTCACACGGCAAGACAGGGAACGTGCATGGAATGAACTTCAAGGAGCTGCTAAAGAGCGAAAAACAAGACCATTTTATCGAGCAGTTAATAAACAAGGTTTCATGTATGCAGGAGGTCTTGATGAACCTATTCATCGCCCGTTTGTTGAAAGGGATTGGAAGTTTGGACACTATGAGATGGAAGGTCTGCAGGATCCATTCAGCCGCTTGTCTCGATTTTTCCTCACACCTCTTCTCTCCCTCAAAAAAATGAGGAAAGCAAAAGCTAAAAATAGAAAGGATGAGAAGGAGCAATTGGTTCTTCAGCCACTTGAAGTAAGCCTTTAA

Network for GWHGAAZE022270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	190	375	3.60E-33
PF00232.19	Glyco_hydro_1	395	543	1.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21362	SFR2	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.590
	SRR3591706	second leaf	53.255
	SRR3591707	mature leaf	54.516
	SRR3591708	Shoot apex	44.531
	SRR3591709	Stem	31.293
	SRR3591710	White floral bud	28.376
	SRR3591711	White flower	37.163
	SRR3591712	Green floral bud	26.755
	SRR3591713	Yellow flower	77.492
SRP173429	SRR8316895	Juvenile bud stage	20.935
	SRR8316896	Juvenile bud stage	25.882
	SRR8316897	Juvenile bud stage	11.302
	SRR8316894	Third green stage	11.848
	SRR8316900	Third green stage	28.007
	SRR8316901	Third green stage	28.835
	SRR8316898	Complete white stage	15.296
	SRR8316899	Complete white stage	56.000
	SRR8316903	Complete white stage	25.326
	SRR8316902	Silver flowering stage	11.344
	SRR8316904	Silver flowering stage	14.832
	SRR8316905	Silver flowering stage	7.710
	SRR8316906	Gold flowering stage	35.705
	SRR8316907	Gold flowering stage	25.976
	SRR8316908	Gold flowering stage	36.156
SRP132670	SRR6706286	Control	48.392
	SRR6706287	Light intensity 50%	42.369
	SRR6706288	Light intensity 20%	43.601
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.502
	CNS0095593	Slightly white alabastrum(diploid) 2	18.248
	CNS0095594	Slightly white alabastrum(diploid) 3	15.606
	CNS0095595	Whole white alabastrum(diploid) 2	13.195
	CNS0095596	Whole white alabastrum(diploid) 3	14.333
	CNS0095597	Whole white alabastrum(diploid) 4	13.645
	CNS0095598	Silvery flower (diploied) 1	31.209
	CNS0095599	Silvery flower (diploied) 2	31.593
	CNS0095600	Silvery flower (diploied) 3	44.402
	CNS0095601	Golden flower (diploid) 1	44.645
	CNS0095602	Golden flower (diploid) 2	59.467
	CNS0095603	Golden flower (diploid) 3	55.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.544
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.524
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.210
	CNS0095610	Silvery flower (tetraploid) 1	52.625
	CNS0095611	Silvery flower (tetraploid) 2	54.180
	CNS0095612	Silvery flower (tetraploid) 3	34.941
	CNS0095613	Golden flower (tetraploid) 1	45.489
	CNS0095614	Golden flower (tetraploid) 2	55.825
	CNS0095615	Golden flower (tetraploid) 3	58.081
CRA001975	CRR073297	Stem 1	31.430
	CRR073298	Stem 2	31.870
	CRR073299	Stem 3	21.350
	CRR073300	Leaf 1	33.219
	CRR073301	Leaf 2	28.711
	CRR073302	Leaf 3	23.034
	CRR073303	Juvenile bud 1	28.399
	CRR073304	Juvenile bud 2	23.267
	CRR073305	Juvenile bud 3	39.211
	CRR073306	Third green 1	7.685
	CRR073307	Third green 2	6.379
	CRR073308	Third green 3	7.202
	CRR073309	Second white 1	13.467
	CRR073310	Second white 2	12.741
	CRR073311	Second white 3	14.330
	CRR073312	Silver flowering 1	19.861
	CRR073313	Silver flowering 2	18.336
	CRR073314	Silver flowering 3	20.126
	CRR073315	Gold flowering 1	19.854
	CRR073316	Gold flowering 2	32.654
	CRR073317	Gold flowering 3	20.707
	CRR073318	Tawny withering 1	19.830
	CRR073319	Tawny withering 2	14.853
	CRR073320	Tawny withering 3	16.075