Gene detail

Detail information of GWHGAAZE022248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100758.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0282963 isoform X2 [Sesamum indicum]
COG	YP_001958461.1	1E-30	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2E-83	Serine/threonine-protein kinase EDR1
trEMBL	tr\|B9HX25\|B9HX25_POPTR	0	Kinase family protein {ECO:0000313\|EMBL:EEF01121.2}
TAIR10	AT5G49470.3	0	PAS domain-containing protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69152211	69157117	+
GWHAAZE00000006	mRNA	69152211	69157117	+
GWHAAZE00000006	exon	69152211	69152653	+
GWHAAZE00000006	exon	69153068	69153482	+
GWHAAZE00000006	exon	69153570	69154230	+
GWHAAZE00000006	exon	69154650	69154690	+
GWHAAZE00000006	exon	69155233	69155301	+
GWHAAZE00000006	exon	69155631	69155731	+
GWHAAZE00000006	exon	69155842	69155920	+
GWHAAZE00000006	exon	69156342	69156410	+
GWHAAZE00000006	exon	69156507	69156556	+
GWHAAZE00000006	exon	69156658	69156739	+
GWHAAZE00000006	exon	69156858	69156952	+
GWHAAZE00000006	exon	69157066	69157117	+
GWHAAZE00000006	CDS	69152211	69152653	+
GWHAAZE00000006	CDS	69153068	69153482	+
GWHAAZE00000006	CDS	69153570	69154230	+
GWHAAZE00000006	CDS	69154650	69154690	+
GWHAAZE00000006	CDS	69155233	69155301	+
GWHAAZE00000006	CDS	69155631	69155731	+
GWHAAZE00000006	CDS	69155842	69155920	+
GWHAAZE00000006	CDS	69156342	69156410	+
GWHAAZE00000006	CDS	69156507	69156556	+
GWHAAZE00000006	CDS	69156658	69156739	+
GWHAAZE00000006	CDS	69156858	69156952	+
GWHAAZE00000006	CDS	69157066	69157117	+

Transcript Sequence
>GWHTAAZE022276 ATGGAGAATAATAACAAAAAACTACCGGCGGAAGAGCTACTGAAGAAGATCCAAGAGCTAGAAGAGGGACAAGCAAACCTCAAGCAAGAGATGTCCAAGCTCAGGATAACGCCCGGTCGGAAAATGGACAGAAACCGGTACCAAAGATCACAATCGATATCACCGCAACGGTCGGCCCGGCGCAGAGGATTTGATAGCGCCGGTGGTGGTACTTCTGCGGCGTTGAAGATTGGTTCCACATCGGTCCGGCATTCATCGCCGTTGCAGAGGGAGAGCCGTGGCGATGGAGTTGGTGCTAGTACTAGTACTAGTACTAGCTCCGGTGGGGGCAGTGGAGAGGCCGCGGCTCCGGTGAAGTTTTCCGAGAGGCAATACTTGAATATTTTGCAGTCAATGGGGCAGGGAGTTCATATATGGGACGTAAACGGTCGGATAATTTACTGGAATCGAAGTGCTGAACGCCTTTACGGTTATACTTCTGCAGAAGCTCTAGGGCAGAATGCAGTTGAGTTCCTAGTGGATCCCCCAGAGTATGCCATAGCTTATAATATAATAGACCGTGTGATAATGGGGGAGAGCTGGACTGGGCAGTTCCCTCTTTTGAACAAGAGTGGGGAAAAGCTTCAAGTATGTGCAACAAACACCCCGTTCTATGATGACGATGGTTCGGTGATTGGAGTCATTTGTGTATCAAGTGATTCGCAGCCTTTTAAAGATACGAGTGCCGTGATTTGGGGTCCGAAGAAATTAGAAGCAGATTCAAGCTTTAGCAGGCCAAAGAACATTGCTTCGGCTAAACTTGGGCTTGATCCTCAGCAGCCTCTGCAAGTTGCAATTGCTTCAAAAATATCAAATTTGGCTACCAAGGTGAGCAACAAGGTGAAGTCGAAAATGAGGACAACAGATAACCTGATGGATCGTGAAGGTGGGAGTGGAGATAGTCATAATTCTGATCACAGTTTTCCAGATGTGGTTCTCTCTGACCATAGGGAGGATGCGATTTCGAGTGGAGATAGTCATAATTCTGTATCTGGAGTATTTTCTCACCCTTCCCGTGAGGAGCATTCACCGGGAAAACTTTTTAGGGAATATCCTGGTGACGAAGGTGAAGGTAAATTAGGGTTAAAAAATGTTATTTCTTCGAAGGCTGAGGCTTGGATGGTCAAGAAAGGAATATCATGGCCGTGGAAAGGCAATGAGAGAGAAGGGTCTGAGGCAAGGGCATCTCGTTTTGTTTGGCCCTGGCTACATAATGATCAAGAAAATGAATCGGATTACCAGAAAAGCTCTTCTTCTGGTGCTACAAAACCAGAAAGTGTGGTGAGCGAAACTCCGCGGCCAAACAATAATGAGGCTTATGGGTCCTGGTCCTCTTCATGTAATGTTAATAGCACAAGCAGTGCAAGTAGCTGTGGGAGTACCAATAGTAGTGCTGCTAATAAGGTAGATGTGGACAGTGACTCCTTGGACTATGAAATCTTGTGGGAGGACTTGACCATTGGAGAACAAATTGGGCAAGGTTCTTGTGGGACTGTATACCATGCTCTGTGGTACGGATCAGATGTTGCTGTCAAGGTATTCTCCAAGCAAGAATATTCAGATGATGTTATACATTCCTTCAGACAAGAGGTGTCTCTTATGAAAAGACTTCGACATCCAAACGTTCTGCTCTTTATGGGTGCAGTAACTTCACCTCAGCATCTCTGCATTGTTACAGAGTTCCTTCCCCGTGGGAGTTTGTTCCGGTTATTACAGAGGAATCAATCCAAATTAGACTGGAGACGGCGTGTTCACATGGCATTGGATATAGTTGGCGACTTTGGTCTGTCTCGTCTCAAACATGAAACATTTCTCACAACAAAGACAGGGAAAGGAACGCCTCAATGGATGGCTCCTGAAGTTCTTCGTAATGAACCCTCCGATGAAAAGTCTGACGTCTACAGCTATGGGGTGGTCTTGTGGGAACTTGTCACTGAAAAGATCCCTTGGGAAAATCTCAACTCGATGCAGGTAATTGGAGCCGTAGGGTTCATGGACCATCGACTTGAGATACCAAAAGATGTGGATCCACGATGGGCTTCAATAATCGAAAGCTGCTGGTACAGGGCATGTCTACTAATGATGAATATCCAAGTTTATGCATGCCCATGCATGTGA

Network for GWHGAAZE022248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00989.26	PAS	124	231	3.40E-16
PF07714.18	PK_Tyr_Ser-Thr	498	603	3.50E-20
PF07714.18	PK_Tyr_Ser-Thr	604	701	2.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.513
	SRR3591706	second leaf	16.957
	SRR3591707	mature leaf	22.452
	SRR3591708	Shoot apex	9.741
	SRR3591709	Stem	15.493
	SRR3591710	White floral bud	14.338
	SRR3591711	White flower	17.408
	SRR3591712	Green floral bud	10.145
	SRR3591713	Yellow flower	2.701
SRP173429	SRR8316895	Juvenile bud stage	4.112
	SRR8316896	Juvenile bud stage	5.893
	SRR8316897	Juvenile bud stage	3.404
	SRR8316894	Third green stage	4.575
	SRR8316900	Third green stage	8.583
	SRR8316901	Third green stage	7.853
	SRR8316898	Complete white stage	1.911
	SRR8316899	Complete white stage	12.974
	SRR8316903	Complete white stage	4.841
	SRR8316902	Silver flowering stage	1.403
	SRR8316904	Silver flowering stage	2.847
	SRR8316905	Silver flowering stage	0.769
	SRR8316906	Gold flowering stage	2.737
	SRR8316907	Gold flowering stage	5.159
	SRR8316908	Gold flowering stage	5.725
SRP132670	SRR6706286	Control	10.836
	SRR6706287	Light intensity 50%	9.531
	SRR6706288	Light intensity 20%	9.300
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.220
	CNS0095593	Slightly white alabastrum(diploid) 2	4.020
	CNS0095594	Slightly white alabastrum(diploid) 3	4.113
	CNS0095595	Whole white alabastrum(diploid) 2	2.788
	CNS0095596	Whole white alabastrum(diploid) 3	2.997
	CNS0095597	Whole white alabastrum(diploid) 4	2.949
	CNS0095598	Silvery flower (diploied) 1	12.009
	CNS0095599	Silvery flower (diploied) 2	6.030
	CNS0095600	Silvery flower (diploied) 3	5.771
	CNS0095601	Golden flower (diploid) 1	7.280
	CNS0095602	Golden flower (diploid) 2	7.727
	CNS0095603	Golden flower (diploid) 3	6.567
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.386
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.996
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.999
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.332
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.531
	CNS0095610	Silvery flower (tetraploid) 1	10.318
	CNS0095611	Silvery flower (tetraploid) 2	6.896
	CNS0095612	Silvery flower (tetraploid) 3	3.177
	CNS0095613	Golden flower (tetraploid) 1	1.134
	CNS0095614	Golden flower (tetraploid) 2	9.186
	CNS0095615	Golden flower (tetraploid) 3	2.868
CRA001975	CRR073297	Stem 1	11.793
	CRR073298	Stem 2	10.950
	CRR073299	Stem 3	8.885
	CRR073300	Leaf 1	13.095
	CRR073301	Leaf 2	11.690
	CRR073302	Leaf 3	8.841
	CRR073303	Juvenile bud 1	9.424
	CRR073304	Juvenile bud 2	4.125
	CRR073305	Juvenile bud 3	15.329
	CRR073306	Third green 1	0.664
	CRR073307	Third green 2	0.919
	CRR073308	Third green 3	2.174
	CRR073309	Second white 1	0.741
	CRR073310	Second white 2	2.141
	CRR073311	Second white 3	1.081
	CRR073312	Silver flowering 1	0.876
	CRR073313	Silver flowering 2	1.099
	CRR073314	Silver flowering 3	1.311
	CRR073315	Gold flowering 1	11.367
	CRR073316	Gold flowering 2	16.700
	CRR073317	Gold flowering 3	6.224
	CRR073318	Tawny withering 1	8.761
	CRR073319	Tawny withering 2	6.146
	CRR073320	Tawny withering 3	6.936