Gene detail

Detail information of GWHGAAZE022187

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649570.1	0	PREDICTED: phospholipase D p1 isoform X1 [Vitis vinifera]
COG	YP_283621.1	5E-28	phospholipase D/transphosphatidylase
Swissprot	tr\|Q9LRZ5\|PLDP1_ARATH	0	Phospholipase D p1
trEMBL	tr\|F6H6X5\|F6H6X5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48017.1}
TAIR10	AT3G16785.1	0	phospholipase D P1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68242545	68254491	+
GWHAAZE00000006	mRNA	68242545	68254491	+
GWHAAZE00000006	exon	68242545	68242981	+
GWHAAZE00000006	exon	68244575	68244676	+
GWHAAZE00000006	exon	68244827	68244942	+
GWHAAZE00000006	exon	68245048	68245189	+
GWHAAZE00000006	exon	68246051	68246221	+
GWHAAZE00000006	exon	68246612	68246785	+
GWHAAZE00000006	exon	68247608	68247850	+
GWHAAZE00000006	exon	68247957	68248073	+
GWHAAZE00000006	exon	68248237	68248376	+
GWHAAZE00000006	exon	68248489	68248638	+
GWHAAZE00000006	exon	68249033	68249189	+
GWHAAZE00000006	exon	68249277	68249780	+
GWHAAZE00000006	exon	68250427	68250537	+
GWHAAZE00000006	exon	68251606	68251752	+
GWHAAZE00000006	exon	68251835	68252032	+
GWHAAZE00000006	exon	68253506	68253607	+
GWHAAZE00000006	exon	68253824	68253955	+
GWHAAZE00000006	exon	68254071	68254136	+
GWHAAZE00000006	exon	68254230	68254291	+
GWHAAZE00000006	exon	68254374	68254491	+
GWHAAZE00000006	five_prime_UTR	68242545	68242744	+
GWHAAZE00000006	CDS	68242745	68242981	+
GWHAAZE00000006	CDS	68244575	68244676	+
GWHAAZE00000006	CDS	68244827	68244942	+
GWHAAZE00000006	CDS	68245048	68245189	+
GWHAAZE00000006	CDS	68246051	68246221	+
GWHAAZE00000006	CDS	68246612	68246785	+
GWHAAZE00000006	CDS	68247608	68247850	+
GWHAAZE00000006	CDS	68247957	68248073	+
GWHAAZE00000006	CDS	68248237	68248376	+
GWHAAZE00000006	CDS	68248489	68248638	+
GWHAAZE00000006	CDS	68249033	68249189	+
GWHAAZE00000006	CDS	68249277	68249780	+
GWHAAZE00000006	CDS	68250427	68250537	+
GWHAAZE00000006	CDS	68251606	68251752	+
GWHAAZE00000006	CDS	68251835	68252032	+
GWHAAZE00000006	CDS	68253506	68253607	+
GWHAAZE00000006	CDS	68253824	68253955	+
GWHAAZE00000006	CDS	68254071	68254136	+
GWHAAZE00000006	CDS	68254230	68254291	+
GWHAAZE00000006	CDS	68254374	68254491	+

Transcript Sequence
>GWHTAAZE022215 CTGTCTTCCTCCCAGATTTTGACGTAGAGTTGTATTTCAGTTATCTCGTGAATACAACAACAAGAAAATCAAAACCAATTTCTTAACAATAATTTATTTATTTTTAATCTCCTCCCAGTAAGACACTCGCATACTCAAACCCATCTATTATTATTGAAAGATCCAAGCACTATCAAAAGCTTTCTGATTAGGAAGAATCAATGGCATCGGAGCAATTAATGACAGGTGGTGGTCCACGTTACGTTCAAATGCAATCGGAGCCGCCGGCGACGTCTCCGTCGATGATCTCATCCTTCTTCTCCTTCCACCACACCCCAGAGTCAACTCGAATTTTCGATGAGTTGCCCAAGGCCATAATCCTGGAAGTTTCTCGTCCCGATGCCGGCGATATTAGCCCCTTGCTTCTTCATTACACCATTGAGTTTCAATACAAACAGTTCAAGTGGCAATTGAGGAAGAAAGCGTCACAAGTATTTTATCTACACTTTGCATTAAAGAAACGTGCATTTATTGAGGAAATTCATGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAACCTAGGAATAGGAGATCACACAGCAGTTGTGCAAGAAGATGATGAAGCTGATGACGAGACTGTACCTTTACATAATGAGGAAAGTACTAGAAACAGAGATGTTCCATCTAGTGCTGCTCTTCCAATTATTCGGCCGGCGCTGGGATGGCAACAATCCATGTCAGACCGAGCAAAGGTTGCAATGCAAGGGTACTTGAATCATTTTCTTGGAAACATGGATATAGTGAACTCACGAGAGGTTTGCAAGTTTTTGGAGGTTTCTCAATTATCCTTCTCGCCCGAGTATGGCCCTAAGCAAAAAGAAGATTATGTAATGGTGAAGCACTTAGCAAATATTCCAAATGGTGACGATCATAGGAAATGTTGTGCGTGTCCTTGGTTCAGCTGTTGCAATGACAACTGGCAAAAGGTGTGGGCTGTATTGAAACCTGGATTCTTGGCCTTGCTGAAAGATCCTTTTGACGCCAATCCATTAGATATAATTGTTTTTGATGTTCTGCCTGCCTCAGATGGAAATGGAGAAGGCCGGGTATCATTAGCAAAAGAGATAAAAGAGCGTAACCCTCTACGGCATTCATTTAAGGTGTCTTGTGGGATCCGGAGTATAAGATTACGAACTAAGACTAGTGGTAAAGTTAAAGATTGGGTTGCTGCAATTAACGATGCTGGTCTTCGGCCTCCTGAAGGATGGTGTCATCCCCACCGTTTTGGCTCCTTTGCTCCTTTGCGGGGTTTGACTGAAGACACTAGCCAGGCCCAGTGGTTTGTAGATGGTCGAGCTGCATTTGATGCTATTGCTTTGGCAATCGAGGAAGCAAAGTCAGAGATATTTATATGTGGCTGGTGGGTTTGCCCAGAACTGTATATGCGACGACCTTTTCATGCAAATGCAGCCTCCCGGCTTGATGCTTTGTTGGAAGCAAAAGCCAAGCAAGGTGTTCAGATCTACATTCTCCTATACAAAGAGGTTGCTCTTGCCTTGAAAATTAACAGTGTTTATAGTAAGAGGAAGCTTCTTGACATTCATGAGAATGTCAGAGTACTGCGTTATCCAGACCATTTCTCTAGTGGTGTCTATCTATGGTCCCACCATGAAAAAATTGTCATCGTTGATCATCACATCTGCTTTATTGGAGGGTTAGATCTATGCTTTGGTCGTTATGACTCATCTGAACACAAAGTGGGTGATTACCCCCCTTCGATATGGCCCGGAAAGGACTACTACAACCCAAGAGAATCAGAGCCCAATTCCTGGGAAGATACTATGAAGGATGAGGTAGATCGTGAGAAATTTCCGCGTATGCCATGGCACGATGTCCACTGCGCCCTTTGGGGACCACCTTGTCGTGATGTTGCTCGGCACTTTGTTCAGCGTTGGAACTATGCAAAGAGAAACAAAGCTCCAAATGAGCAAGCCATCCCACTACTAATGCCTCAGCAGCATATGGTTATACCACATTACCTGGGAAGCAGCAGAGAAAAGGATGATGAAAATAAGAATATCGGAGAGAACCATAAAGATATCAAAAGACAGGATTCTTTTTCCTCTCTCTCATCTTTCCAGGATATCCCTTTGCTTATGCCTCAAGAGGCTGACGGTCTCAATGATTCTAATTTCGAAACAAAATCAAATGTGTTGGACATGGCACATGATTTCTGTGATCAGCCAAGCAGGGCCAGCAGAACTTCTTTCTCTTTCCGCAAGTCCAAAATCGAACCTTTAGTTTCAGATATGGCAATGAAAGGATTTGTGGATGACTTGGACACTCTTGATCCTAAGCACAGTATGAAAACTTCAGATAAAGAATGGTGGGAAACACAAGAGCGAGGTGATCAAGTTGTTTCTGCTGATGAAACTGGTCAAGTTGGTCCTCGTGTATCGTGTCGCTGTCAGGTTCTAAGGAGTGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGAGAGCATTCACAATGCTTACTGTTCTCTTATTGAAAAAGCTGAACATTTTGTCTATATTGAGAATCAATTCTTCATCTCAGGTCTTGCAGGAGATGAGATTATAAGGAACCGCGTGTTAGAAGCACTATACATGCGTATCAAGCGAGCATACAATGAAAATAAGTGTTTTAGGGTTATTATTATCATACCACTCCTACCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCAGCATCTGTGAGAGCAATTATGCATTGGCAATATCGAACAATATGCAGAGGACAATATTCTATACTGCATAATCTCTACAATCTTATTGGTCCTAGAATGCATGATTACATATCTTTCTATGGTCTCAGAGCTTATGGCAGACTTTTCAAGGGTGGTCCTGTGGCCTCCAGTCAGGTTTATGTGCATAGCAAGGTCATGATAGTTGATGACTGTACAGTTTTGATAGGATCGGCTAATATTAATGACAGAAGTTTGCTTGGATCAAGAGATTCTGAGATTGGTTTACTTATTGAAGACAAAGAATTTGTGGATTCATGTATGGGAGGCAAGCCATACAAGGCTGGCAAATTTGCATTGAGTCTTCGTTTGTCACTCTGGTCTGAGCACCTTGGTCTTCATTCCAGAGAGATTGGCCAGATAGGCGACCCAGTTATTGATTCAACCTACAAAGATATTTGGATGACAACTGCAAAGACAAATACAGCAATCTACCAAGATGTATTTTCTTGCATCCCAAGCGATTTAATACACTCCAGAGCTTCGCTTAGGCAATGCATGTCCCATTGGAAGGAGAAATACTCCCACACCACCATAGACCTAGGAATAGCGCCCGGGAAATTGGAATCATATCAAGACGGGCTCTCAAGGAAATAG

Network for GWHGAAZE022187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00614.23	PLDc	479	506	7.00E-11
PF13091.7	PLDc_2	904	949	3.70E-08

Protein Sequence

>GWHPAAZE022202
MASEQLMTGGGPRYVQMQSEPPATSPSMISSFFSFHHTPESTRIFDELPKAIILEVSRPDAGDISPLLLHYTIEFQYKQFKWQLRKKASQVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDHTAVVQEDDEADDETVPLHNEESTRNRDVPSSAALPIIRPALGWQQSMSDRAKVAMQGYLNHFLGNMDIVNSREVCKFLEVSQLSFSPEYGPKQKEDYVMVKHLANIPNGDDHRKCCACPWFSCCNDNWQKVWAVLKPGFLALLKDPFDANPLDIIVFDVLPASDGNGEGRVSLAKEIKERNPLRHSFKVSCGIRSIRLRTKTSGKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPLRGLTEDTSQAQWFVDGRAAFDAIALAIEEAKSEIFICGWWVCPELYMRRPFHANAASRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLDIHENVRVLRYPDHFSSGVYLWSHHEKIVIVDHHICFIGGLDLCFGRYDSSEHKVGDYPPSIWPGKDYYNPRESEPNSWEDTMKDEVDREKFPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPQQHMVIPHYLGSSREKDDENKNIGENHKDIKRQDSFSSLSSFQDIPLLMPQEADGLNDSNFETKSNVLDMAHDFCDQPSRASRTSFSFRKSKIEPLVSDMAMKGFVDDLDTLDPKHSMKTSDKEWWETQERGDQVVSADETGQVGPRVSCRCQVLRSVSQWSAGTSQVEESIHNAYCSLIEKAEHFVYIENQFFISGLAGDEIIRNRVLEALYMRIKRAYNENKCFRVIIIIPLLPGFQGGLDDGGAASVRAIMHWQYRTICRGQYSILHNLYNLIGPRMHDYISFYGLRAYGRLFKGGPVASSQVYVHSKVMIVDDCTVLIGSANINDRSLLGSRDSEIGLLIEDKEFVDSCMGGKPYKAGKFALSLRLSLWSEHLGLHSREIGQIGDPVIDSTYKDIWMTTAKTNTAIYQDVFSCIPSDLIHSRASLRQCMSHWKEKYSHTTIDLGIAPGKLESYQDGLSRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0006654	biological_process	phosphatidic acid biosynthetic process
GO:0048017	biological_process	inositol lipid-mediated signaling
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.315
	SRR3591706	second leaf	4.256
	SRR3591707	mature leaf	5.721
	SRR3591708	Shoot apex	3.559
	SRR3591709	Stem	7.620
	SRR3591710	White floral bud	8.179
	SRR3591711	White flower	11.821
	SRR3591712	Green floral bud	7.277
	SRR3591713	Yellow flower	13.123
SRP173429	SRR8316895	Juvenile bud stage	3.386
	SRR8316896	Juvenile bud stage	5.364
	SRR8316897	Juvenile bud stage	1.952
	SRR8316894	Third green stage	2.847
	SRR8316900	Third green stage	6.121
	SRR8316901	Third green stage	6.136
	SRR8316898	Complete white stage	3.339
	SRR8316899	Complete white stage	8.809
	SRR8316903	Complete white stage	5.615
	SRR8316902	Silver flowering stage	4.287
	SRR8316904	Silver flowering stage	6.917
	SRR8316905	Silver flowering stage	2.875
	SRR8316906	Gold flowering stage	11.165
	SRR8316907	Gold flowering stage	10.381
	SRR8316908	Gold flowering stage	12.772
SRP132670	SRR6706286	Control	7.503
	SRR6706287	Light intensity 50%	7.288
	SRR6706288	Light intensity 20%	7.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.890
	CNS0095593	Slightly white alabastrum(diploid) 2	1.572
	CNS0095594	Slightly white alabastrum(diploid) 3	2.644
	CNS0095595	Whole white alabastrum(diploid) 2	2.104
	CNS0095596	Whole white alabastrum(diploid) 3	2.101
	CNS0095597	Whole white alabastrum(diploid) 4	2.996
	CNS0095598	Silvery flower (diploied) 1	3.775
	CNS0095599	Silvery flower (diploied) 2	3.178
	CNS0095600	Silvery flower (diploied) 3	8.723
	CNS0095601	Golden flower (diploid) 1	2.484
	CNS0095602	Golden flower (diploid) 2	8.480
	CNS0095603	Golden flower (diploid) 3	8.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.168
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.550
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.276
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.586
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.470
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.640
	CNS0095610	Silvery flower (tetraploid) 1	7.975
	CNS0095611	Silvery flower (tetraploid) 2	7.035
	CNS0095612	Silvery flower (tetraploid) 3	7.274
	CNS0095613	Golden flower (tetraploid) 1	3.898
	CNS0095614	Golden flower (tetraploid) 2	7.644
	CNS0095615	Golden flower (tetraploid) 3	10.403
CRA001975	CRR073297	Stem 1	6.398
	CRR073298	Stem 2	5.396
	CRR073299	Stem 3	3.627
	CRR073300	Leaf 1	6.534
	CRR073301	Leaf 2	4.280
	CRR073302	Leaf 3	3.404
	CRR073303	Juvenile bud 1	4.070
	CRR073304	Juvenile bud 2	2.213
	CRR073305	Juvenile bud 3	4.397
	CRR073306	Third green 1	3.182
	CRR073307	Third green 2	2.097
	CRR073308	Third green 3	2.380
	CRR073309	Second white 1	1.765
	CRR073310	Second white 2	3.749
	CRR073311	Second white 3	4.413
	CRR073312	Silver flowering 1	5.484
	CRR073313	Silver flowering 2	5.328
	CRR073314	Silver flowering 3	4.957
	CRR073315	Gold flowering 1	1.422
	CRR073316	Gold flowering 2	4.109
	CRR073317	Gold flowering 3	1.365
	CRR073318	Tawny withering 1	3.524
	CRR073319	Tawny withering 2	2.721
	CRR073320	Tawny withering 3	3.247