Detail information of GWHGAAZE022162


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011084873.14.8337E-174PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Sesamum indicum]
COGNP_069363.11E-15translation initiation factor IF-2 subunit alpha
trEMBLtr|W9QN46|W9QN46_9ROSA2E-171Eukaryotic translation initiation factor 2 subunit alpha {ECO:0000313|EMBL:EXB29255.1}
TAIR10AT2G40290.13E-120Eukaryotic translation initiation factor 2 subunit 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6782093367825119-
GWHAAZE00000006mRNA6782093367825119-
GWHAAZE00000006exon6782473667825119-
GWHAAZE00000006exon6782278667822872-
GWHAAZE00000006exon6782256567822711-
GWHAAZE00000006exon6782232767822431-
GWHAAZE00000006exon6782177867821876-
GWHAAZE00000006exon6782093367821375-
GWHAAZE00000006CDS6782473667825119-
GWHAAZE00000006CDS6782278667822872-
GWHAAZE00000006CDS6782256567822711-
GWHAAZE00000006CDS6782232767822431-
GWHAAZE00000006CDS6782177867821876-
GWHAAZE00000006CDS6782122067821375-
GWHAAZE00000006three_prime_UTR6782093367821219-
Transcript Sequence

Network for GWHGAAZE022162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0103GO:0005801 cis-Golgi network GOslim:cellular_component
GO:0006886 intracellular protein transport GOslim:biological_process
GO:0003743 translation initiation factor activity GOslim:molecular_function
map04138 Autophagy - yeast
map04210 Apoptosis
map04140 Autophagy - animal


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00575.24S140921.40E-05
PF07541.13EIF_2_alpha1142417.60E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03237EIF2S1 RNA transport map03013
Protein processing in endoplasmic reticulummap04141
Autophagy - animalmap04140
Autophagy - yeastmap04138
Apoptosismap04210

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.909
SRR3591706second leaf12.404
SRR3591707mature leaf13.506
SRR3591708Shoot apex29.007
SRR3591709Stem19.313
SRR3591710White floral bud13.698
SRR3591711White flower23.712
SRR3591712Green floral bud21.401
SRR3591713Yellow flower19.756
SRP173429 SRR8316895Juvenile bud stage 19.392
SRR8316896Juvenile bud stage 24.321
SRR8316897Juvenile bud stage 12.431
SRR8316894Third green stage 8.573
SRR8316900Third green stage 28.135
SRR8316901Third green stage 24.180
SRR8316898Complete white stage 5.778
SRR8316899Complete white stage 31.012
SRR8316903Complete white stage 10.642
SRR8316902Silver flowering stage9.074
SRR8316904Silver flowering stage10.053
SRR8316905Silver flowering stage4.812
SRR8316906Gold flowering stage 18.242
SRR8316907Gold flowering stage 16.666
SRR8316908Gold flowering stage 22.482
SRP132670SRR6706286Control19.481
SRR6706287Light intensity 50%19.739
SRR6706288Light intensity 20%20.615
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.931
CNS0095593Slightly white alabastrum(diploid) 231.706
CNS0095594Slightly white alabastrum(diploid) 328.217
CNS0095595Whole white alabastrum(diploid) 223.075
CNS0095596Whole white alabastrum(diploid) 320.798
CNS0095597Whole white alabastrum(diploid) 419.442
CNS0095598Silvery flower (diploied) 125.842
CNS0095599Silvery flower (diploied) 217.144
CNS0095600Silvery flower (diploied) 321.192
CNS0095601Golden flower (diploid) 118.451
CNS0095602Golden flower (diploid) 218.487
CNS0095603Golden flower (diploid) 318.036
CNS0095604Slightly white alabastrum(tetraploid) 129.325
CNS0095605Slightly white alabastrum(tetraploid) 227.834
CNS0095606Slightly white alabastrum(tetraploid) 345.023
CNS0095607Whole white alabastrum(tetraploid) 120.598
CNS0095608Whole white alabastrum(tetraploid) 215.355
CNS0095609Whole white alabastrum(tetraploid) 331.232
CNS0095610Silvery flower (tetraploid) 131.336
CNS0095611Silvery flower (tetraploid) 227.802
CNS0095612Silvery flower (tetraploid) 316.279
CNS0095613Golden flower (tetraploid) 121.481
CNS0095614Golden flower (tetraploid) 230.678
CNS0095615Golden flower (tetraploid) 317.539
CRA001975CRR073297Stem 128.476
CRR073298Stem 224.085
CRR073299Stem 328.117
CRR073300Leaf 126.278
CRR073301Leaf 226.199
CRR073302Leaf 327.743
CRR073303Juvenile bud 129.002
CRR073304Juvenile bud 217.330
CRR073305Juvenile bud 330.488
CRR073306Third green 12.205
CRR073307Third green 22.506
CRR073308Third green 34.087
CRR073309Second white 17.936
CRR073310Second white 28.994
CRR073311Second white 35.014
CRR073312Silver flowering 15.279
CRR073313Silver flowering 25.919
CRR073314Silver flowering 36.928
CRR073315Gold flowering 124.549
CRR073316Gold flowering 226.936
CRR073317Gold flowering 316.994
CRR073318Tawny withering 135.817
CRR073319Tawny withering 234.925
CRR073320Tawny withering 337.714