Gene detail

Detail information of GWHGAAZE022161

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010314706.1	7.3181E-167	PREDICTED: chaperone protein dnaJ 49 [Solanum lycopersicum]
COG	YP_005004917.1	5E-15	chaperone protein DnaJ
Swissprot	tr\|Q9FH28\|DNJ49_ARATH	3E-115	Chaperone protein dnaJ 49
trEMBL	tr\|M1A0I2\|M1A0I2_SOLTU	2E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400011991}
TAIR10	AT5G49060.1	2E-89	Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67803444	67804493	+
GWHAAZE00000006	mRNA	67803444	67804493	+
GWHAAZE00000006	exon	67803444	67804493	+
GWHAAZE00000006	CDS	67803444	67804493	+

Transcript Sequence
>GWHTAAZE022189 ATGGAGGGTAACAAGGACGAAGCCTTAAGATGTATTGGTATTGCCAAAGAGGCAATTGCCTCAGGTAACAAGGAGCGTGGGCTAAAGTTTATCAAGATTGCGCAGCATCTTAACCCTAGTTTACCAGTGGATGATCTTTTGGCCGAATGTGAAACCCTAGGTTCCACTTCTACTGGTTCTTCAAATGGTGAAAAACATTTTGATAATGGCAAGAATAAGGTCAAGTTTAGTGAGGTTTCAAATGGGCAGCATAATTATACAGAAGAACATGTGCAGTTAATTAGGCAGATTAAGAGGACTAATGACTATTATGGGATCCTAGGGGTAGAAAAGAGTTGCTCTGTTGAGGAGATTAGGAAGGCTTACAAGAAATTGTCATTGAAAGTTCATCCTGATAAGAATAAGGCTCCTAGTTCTGAAGAGGCATTTAAGAAATTATGCAAAGCGTTTAAGTGCTTGAGCGATGATACGTCGAGGAGGGAGTATGATCAGACGGGTTTGGCCGAGGGATTTGAATATAACCAGCAGCATAATGTGAGGAGGAGAAATGGATATGGGGCCTATGGGCATGATATATTTGATGATGAATTTGATCCTCACGAGATATTCAGGTCATTCTTTGGTCAGAGTCAAATGTTCCGACAGACTCATGTTTACAGGACCGGTCCAACACACCATCAAGAAAGGGAAGATTTTGGGGGTACATGGCCTAATGTGGTGCTCCTCCTTCAGATATTGCTGTTTTTGTTGATTATTGTGCTTGCTTATCTGCCATTTTCAGATCCCGATTATTCTTTGCAGAAGAACCATGCTTATCCGTTTGAGAAGATGACTGAAAATTATGGAGTGGAGTTTTATGTTAAATCACCTGAGTTTGATCAGAAATTTCCTTTAGGTAGTCCTGCGCGAGCTAACATTGAGATCAGTGTGATTGGGGATTACAAAAATATGCTAGGACGCTATTGTCATATGGAACACCAGAGGCGTCAATGGAACAGGCGTTTGCCAACTCCTCACTGTGACAAGCTACAAAGTTTCAGAGTAGCATGA

Network for GWHGAAZE022161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	102	163	2.50E-23
PF09320.12	DUF1977	260	330	3.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09518	DNAJB12	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.213
	SRR3591706	second leaf	2.353
	SRR3591707	mature leaf	4.541
	SRR3591708	Shoot apex	4.424
	SRR3591709	Stem	11.709
	SRR3591710	White floral bud	5.073
	SRR3591711	White flower	5.724
	SRR3591712	Green floral bud	8.317
	SRR3591713	Yellow flower	1.848
SRP173429	SRR8316895	Juvenile bud stage	4.211
	SRR8316896	Juvenile bud stage	6.228
	SRR8316897	Juvenile bud stage	2.108
	SRR8316894	Third green stage	2.298
	SRR8316900	Third green stage	8.447
	SRR8316901	Third green stage	6.646
	SRR8316898	Complete white stage	1.769
	SRR8316899	Complete white stage	8.284
	SRR8316903	Complete white stage	3.603
	SRR8316902	Silver flowering stage	1.279
	SRR8316904	Silver flowering stage	2.173
	SRR8316905	Silver flowering stage	1.205
	SRR8316906	Gold flowering stage	1.983
	SRR8316907	Gold flowering stage	2.181
	SRR8316908	Gold flowering stage	2.315
SRP132670	SRR6706286	Control	7.407
	SRR6706287	Light intensity 50%	7.339
	SRR6706288	Light intensity 20%	7.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.918
	CNS0095593	Slightly white alabastrum(diploid) 2	5.497
	CNS0095594	Slightly white alabastrum(diploid) 3	6.731
	CNS0095595	Whole white alabastrum(diploid) 2	3.910
	CNS0095596	Whole white alabastrum(diploid) 3	7.013
	CNS0095597	Whole white alabastrum(diploid) 4	5.501
	CNS0095598	Silvery flower (diploied) 1	6.081
	CNS0095599	Silvery flower (diploied) 2	3.587
	CNS0095600	Silvery flower (diploied) 3	3.913
	CNS0095601	Golden flower (diploid) 1	4.015
	CNS0095602	Golden flower (diploid) 2	5.291
	CNS0095603	Golden flower (diploid) 3	5.678
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.980
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.791
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.542
	CNS0095610	Silvery flower (tetraploid) 1	4.110
	CNS0095611	Silvery flower (tetraploid) 2	3.987
	CNS0095612	Silvery flower (tetraploid) 3	2.890
	CNS0095613	Golden flower (tetraploid) 1	1.548
	CNS0095614	Golden flower (tetraploid) 2	3.217
	CNS0095615	Golden flower (tetraploid) 3	2.667
CRA001975	CRR073297	Stem 1	4.121
	CRR073298	Stem 2	5.250
	CRR073299	Stem 3	3.036
	CRR073300	Leaf 1	2.776
	CRR073301	Leaf 2	3.416
	CRR073302	Leaf 3	3.128
	CRR073303	Juvenile bud 1	3.189
	CRR073304	Juvenile bud 2	2.341
	CRR073305	Juvenile bud 3	3.751
	CRR073306	Third green 1	0.951
	CRR073307	Third green 2	0.236
	CRR073308	Third green 3	0.987
	CRR073309	Second white 1	1.008
	CRR073310	Second white 2	0.666
	CRR073311	Second white 3	0.304
	CRR073312	Silver flowering 1	0.606
	CRR073313	Silver flowering 2	0.552
	CRR073314	Silver flowering 3	0.595
	CRR073315	Gold flowering 1	1.662
	CRR073316	Gold flowering 2	4.043
	CRR073317	Gold flowering 3	3.449
	CRR073318	Tawny withering 1	3.532
	CRR073319	Tawny withering 2	3.131
	CRR073320	Tawny withering 3	4.728