Detail information of GWHGAAZE022148


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649748.10PREDICTED: probable isoleucine--tRNA ligase, mitochondrial isoform X2 [Vitis vinifera]
COGYP_005071287.14E-172isoleucyl-tRNA synthetase
trEMBLtr|F6HDF8|F6HDF8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50328.1}
TAIR10AT5G49030.30tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6763461767640329-
GWHAAZE00000006mRNA6763461767640329-
GWHAAZE00000006exon6763461767635132-
GWHAAZE00000006exon6763569667635875-
GWHAAZE00000006exon6763605667636305-
GWHAAZE00000006exon6763752867637601-
GWHAAZE00000006exon6763780167637926-
GWHAAZE00000006exon6763819367638357-
GWHAAZE00000006exon6763843767638564-
GWHAAZE00000006exon6763874767638875-
GWHAAZE00000006exon6763957467639705-
GWHAAZE00000006exon6764030567640329-
GWHAAZE00000006CDS6764030567640329-
GWHAAZE00000006CDS6763957467639705-
GWHAAZE00000006CDS6763874767638875-
GWHAAZE00000006CDS6763843767638564-
GWHAAZE00000006CDS6763819367638357-
GWHAAZE00000006CDS6763780167637926-
GWHAAZE00000006CDS6763752867637601-
GWHAAZE00000006CDS6763605667636305-
GWHAAZE00000006CDS6763569667635875-
GWHAAZE00000006CDS6763488767635132-
GWHAAZE00000006three_prime_UTR6763461767634886-
Transcript Sequence

Network for GWHGAAZE022148

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.23tRNA-synt_1111613.20E-40
PF08264.14Anticodon_12073711.40E-28
PF06827.15zf-FPG_IleRS4414701.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01870IARS, ileS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0000049molecular_functiontRNA binding
GO:0000166molecular_functionnucleotide binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.550
SRR3591706second leaf41.207
SRR3591707mature leaf43.467
SRR3591708Shoot apex30.868
SRR3591709Stem12.854
SRR3591710White floral bud7.902
SRR3591711White flower10.300
SRR3591712Green floral bud11.450
SRR3591713Yellow flower12.718
SRP173429 SRR8316895Juvenile bud stage 8.156
SRR8316896Juvenile bud stage 10.959
SRR8316897Juvenile bud stage 6.080
SRR8316894Third green stage 4.011
SRR8316900Third green stage 14.019
SRR8316901Third green stage 10.301
SRR8316898Complete white stage 3.525
SRR8316899Complete white stage 11.450
SRR8316903Complete white stage 5.028
SRR8316902Silver flowering stage4.533
SRR8316904Silver flowering stage6.211
SRR8316905Silver flowering stage3.596
SRR8316906Gold flowering stage 10.636
SRR8316907Gold flowering stage 10.599
SRR8316908Gold flowering stage 10.006
SRP132670SRR6706286Control5.670
SRR6706287Light intensity 50%7.116
SRR6706288Light intensity 20%7.290
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.394
CNS0095593Slightly white alabastrum(diploid) 28.625
CNS0095594Slightly white alabastrum(diploid) 38.426
CNS0095595Whole white alabastrum(diploid) 27.801
CNS0095596Whole white alabastrum(diploid) 36.500
CNS0095597Whole white alabastrum(diploid) 45.849
CNS0095598Silvery flower (diploied) 113.267
CNS0095599Silvery flower (diploied) 212.457
CNS0095600Silvery flower (diploied) 39.224
CNS0095601Golden flower (diploid) 112.210
CNS0095602Golden flower (diploid) 210.713
CNS0095603Golden flower (diploid) 312.036
CNS0095604Slightly white alabastrum(tetraploid) 13.824
CNS0095605Slightly white alabastrum(tetraploid) 22.645
CNS0095606Slightly white alabastrum(tetraploid) 36.536
CNS0095607Whole white alabastrum(tetraploid) 11.959
CNS0095608Whole white alabastrum(tetraploid) 21.509
CNS0095609Whole white alabastrum(tetraploid) 33.975
CNS0095610Silvery flower (tetraploid) 14.136
CNS0095611Silvery flower (tetraploid) 24.606
CNS0095612Silvery flower (tetraploid) 35.582
CNS0095613Golden flower (tetraploid) 12.571
CNS0095614Golden flower (tetraploid) 23.831
CNS0095615Golden flower (tetraploid) 32.959
CRA001975CRR073297Stem 118.234
CRR073298Stem 214.449
CRR073299Stem 312.105
CRR073300Leaf 112.986
CRR073301Leaf 213.374
CRR073302Leaf 311.904
CRR073303Juvenile bud 111.697
CRR073304Juvenile bud 28.088
CRR073305Juvenile bud 312.298
CRR073306Third green 13.851
CRR073307Third green 22.994
CRR073308Third green 34.107
CRR073309Second white 18.779
CRR073310Second white 26.441
CRR073311Second white 38.790
CRR073312Silver flowering 17.630
CRR073313Silver flowering 27.029
CRR073314Silver flowering 35.372
CRR073315Gold flowering 138.035
CRR073316Gold flowering 248.829
CRR073317Gold flowering 329.878
CRR073318Tawny withering 111.295
CRR073319Tawny withering 212.414
CRR073320Tawny withering 311.954