Detail information of GWHGAAZE022145


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649748.10PREDICTED: probable isoleucine--tRNA ligase, mitochondrial isoform X2 [Vitis vinifera]
COGYP_005071287.14E-147isoleucyl-tRNA synthetase
trEMBLtr|A5ALP9|A5ALP9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN78050.1}
TAIR10AT5G49030.30tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6756677367571269-
GWHAAZE00000006mRNA6756677367571269-
GWHAAZE00000006exon6757113467571269-
GWHAAZE00000006exon6757081767570944-
GWHAAZE00000006exon6757057367570737-
GWHAAZE00000006exon6757018067570305-
GWHAAZE00000006exon6756990767569980-
GWHAAZE00000006exon6756847767568726-
GWHAAZE00000006exon6756811467568293-
GWHAAZE00000006exon6756677367567288-
GWHAAZE00000006CDS6757113467571269-
GWHAAZE00000006CDS6757081767570944-
GWHAAZE00000006CDS6757057367570737-
GWHAAZE00000006CDS6757018067570305-
GWHAAZE00000006CDS6756990767569980-
GWHAAZE00000006CDS6756847767568726-
GWHAAZE00000006CDS6756811467568293-
GWHAAZE00000006CDS6756704367567288-
GWHAAZE00000006three_prime_UTR6756677367567042-
Transcript Sequence

Network for GWHGAAZE022145

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.23tRNA-synt_1181111.60E-29
PF08264.14Anticodon_11573211.10E-28
PF06827.15zf-FPG_IleRS3914209.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01870IARS, ileS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0000049molecular_functiontRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.406
SRR3591706second leaf25.318
SRR3591707mature leaf26.180
SRR3591708Shoot apex16.657
SRR3591709Stem9.412
SRR3591710White floral bud3.996
SRR3591711White flower7.238
SRR3591712Green floral bud7.606
SRR3591713Yellow flower6.435
SRP173429 SRR8316895Juvenile bud stage 8.603
SRR8316896Juvenile bud stage 12.229
SRR8316897Juvenile bud stage 7.718
SRR8316894Third green stage 5.119
SRR8316900Third green stage 14.790
SRR8316901Third green stage 11.652
SRR8316898Complete white stage 3.010
SRR8316899Complete white stage 10.695
SRR8316903Complete white stage 5.980
SRR8316902Silver flowering stage4.439
SRR8316904Silver flowering stage6.352
SRR8316905Silver flowering stage3.551
SRR8316906Gold flowering stage 11.478
SRR8316907Gold flowering stage 13.902
SRR8316908Gold flowering stage 13.079
SRP132670SRR6706286Control7.439
SRR6706287Light intensity 50%9.134
SRR6706288Light intensity 20%11.516
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.450
CNS0095593Slightly white alabastrum(diploid) 211.041
CNS0095594Slightly white alabastrum(diploid) 39.187
CNS0095595Whole white alabastrum(diploid) 28.467
CNS0095596Whole white alabastrum(diploid) 38.199
CNS0095597Whole white alabastrum(diploid) 47.803
CNS0095598Silvery flower (diploied) 112.790
CNS0095599Silvery flower (diploied) 213.285
CNS0095600Silvery flower (diploied) 39.135
CNS0095601Golden flower (diploid) 113.859
CNS0095602Golden flower (diploid) 210.220
CNS0095603Golden flower (diploid) 39.859
CNS0095604Slightly white alabastrum(tetraploid) 117.324
CNS0095605Slightly white alabastrum(tetraploid) 217.816
CNS0095606Slightly white alabastrum(tetraploid) 328.056
CNS0095607Whole white alabastrum(tetraploid) 111.490
CNS0095608Whole white alabastrum(tetraploid) 210.313
CNS0095609Whole white alabastrum(tetraploid) 321.331
CNS0095610Silvery flower (tetraploid) 123.480
CNS0095611Silvery flower (tetraploid) 225.058
CNS0095612Silvery flower (tetraploid) 324.041
CNS0095613Golden flower (tetraploid) 120.027
CNS0095614Golden flower (tetraploid) 226.119
CNS0095615Golden flower (tetraploid) 314.807
CRA001975CRR073297Stem 117.550
CRR073298Stem 214.012
CRR073299Stem 313.226
CRR073300Leaf 115.576
CRR073301Leaf 214.025
CRR073302Leaf 310.246
CRR073303Juvenile bud 111.228
CRR073304Juvenile bud 28.601
CRR073305Juvenile bud 311.148
CRR073306Third green 13.104
CRR073307Third green 22.234
CRR073308Third green 32.989
CRR073309Second white 16.955
CRR073310Second white 25.811
CRR073311Second white 37.175
CRR073312Silver flowering 14.191
CRR073313Silver flowering 25.560
CRR073314Silver flowering 34.475
CRR073315Gold flowering 139.024
CRR073316Gold flowering 256.474
CRR073317Gold flowering 331.923
CRR073318Tawny withering 112.401
CRR073319Tawny withering 210.962
CRR073320Tawny withering 311.093